View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18989_low_16 (Length: 290)

Name: NF18989_low_16
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18989_low_16
NF18989_low_16
[»] chr3 (11 HSPs)
chr3 (69-274)||(26631942-26632147)
chr3 (62-274)||(26631133-26631345)
chr3 (63-273)||(28085445-28085658)
chr3 (63-274)||(27980817-27981028)
chr3 (74-274)||(28006334-28006534)
chr3 (63-274)||(19482499-19482710)
chr3 (63-274)||(27350538-27350749)
chr3 (96-272)||(19477828-19478003)
chr3 (75-274)||(27380395-27380594)
chr3 (19-77)||(26631871-26631929)
chr3 (185-255)||(27388088-27388158)
[»] scaffold0043 (5 HSPs)
scaffold0043 (63-274)||(50939-51150)
scaffold0043 (78-267)||(30891-31080)
scaffold0043 (78-267)||(45749-45938)
scaffold0043 (74-255)||(29053-29234)
scaffold0043 (157-255)||(43994-44092)
[»] chr5 (2 HSPs)
chr5 (146-274)||(6164379-6164507)
chr5 (63-135)||(6164169-6164241)
[»] scaffold1142 (1 HSPs)
scaffold1142 (98-248)||(2488-2638)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 69 - 274
Target Start/End: Original strand, 26631942 - 26632147
Alignment:
Q  69 acttcgttgagaaagtatagaacttcatcaatgacaacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatcttgattcgaa 168  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||| |||||||| ||| |||||  | ||||||||||    
T  26631942 acttcgttgagaaagtatagaacttcgccaatgacaacattatcaaacacgctacttctcaacaagtattcaacaagcacgaccaacttattgattcgaa 26632041  T
Q  169 aaccaatgtcttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtacacgagctctcttta 268  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||||||||    
T  26632042 aaccaatctcatgaacaagctttggagtgcaaagagtacacaaacccacgttgacaaagaaacttcagttgccaatgctcagatacatgagctctcttta 26632141  T
Q  269 caaatt 274  Q
    ||||||    
T  26632142 caaatt 26632147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 62 - 274
Target Start/End: Original strand, 26631133 - 26631345
Alignment:
Q  62 ttgaaggacttcgttgagaaagtatagaacttcatcaatgacaacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatcttg 161  Q
    ||||||||||| |||||||||||  |||||||| ||||||| ||||||||||||||| | |||||||||||||| |||||||| |||||||||  |||||    
T  26631133 ttgaaggactttgttgagaaagtgaagaacttcttcaatgataacattatcaaacacgccacttctcaacaagtattcaacaagcacaaccaacttcttg 26631232  T
Q  162 attcgaaaaccaatgtcttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtacacgagct 261  Q
     || ||||||  || || ||||||||||||||||||||||||||||||||||||||||||||   ||| |||||| ||||||||||||| |||| ||  |    
T  26631233 ctttgaaaactgatctcatgaacaagctttggagtgcaaagagtacacaaacccacattgacggggaatcttcaactgccaatgctcagatacatgaatt 26631332  T
Q  262 ctctttacaaatt 274  Q
    |||||||||||||    
T  26631333 ctctttacaaatt 26631345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 63 - 273
Target Start/End: Original strand, 28085445 - 28085658
Alignment:
Q  63 tgaaggacttcgttgagaaagtatagaacttcatcaatga---caacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatct 159  Q
    ||||||| || |||||||||||  |||||||| |||||||   | ||||||||||| || | ||||||||||||||  | || || | |||||||  |||    
T  28085445 tgaaggagtttgttgagaaagtccagaacttcttcaatgatgactacattatcaaatacaccacttctcaacaagtactaaagaagcgcaaccaacttct 28085544  T
Q  160 tgattcgaaaaccaatgtcttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtacacgag 259  Q
    ||||| |||||||||| || |||| ||||||| ||||||||||||||||||| ||||||||||| | ||| |||||| ||||||||||||| |||| |||    
T  28085545 tgatttgaaaaccaatctcatgaaaaagcttttgagtgcaaagagtacacaagcccacattgacgatgaatcttcaactgccaatgctcagatacatgag 28085644  T
Q  260 ctctctttacaaat 273  Q
    ||||||||||||||    
T  28085645 ctctctttacaaat 28085658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 63 - 274
Target Start/End: Original strand, 27980817 - 27981028
Alignment:
Q  63 tgaaggacttcgttgagaaagtatagaacttcatcaatgacaacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatcttga 162  Q
    ||||||| || |||||||||||  |||| ||| |||||||||||||||||| |||  | |||||||||||||| ||||  || |||||||||  ||||||    
T  27980817 tgaaggagtttgttgagaaagtgcagaatttcttcaatgacaacattatcagacatgccacttctcaacaagtattcaggaagcacaaccaacttcttga 27980916  T
Q  163 ttcgaaaaccaatgtcttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtacacgagctc 262  Q
    ||||||||   || || ||||||||||||||  ||||||||||||||||||||| |||||||  ||| |||||| ||||| ||||| | |||| || |||    
T  27980917 ttcgaaaaatgatctcatgaacaagctttgggatgcaaagagtacacaaacccatattgacagtgaatcttcaactgccattgctcggatacatgaactc 27981016  T
Q  263 tctttacaaatt 274  Q
    || |||||||||    
T  27981017 tcattacaaatt 27981028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 274
Target Start/End: Original strand, 28006334 - 28006534
Alignment:
Q  74 gttgagaaagtatagaacttcatcaatgacaacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatcttgattcgaaaacca 173  Q
    |||||||||||  |||||||| |||  || ||||||||||||||| | | || |||||  ||  |||| || |||||||||  ||||||||| |||||      
T  28006334 gttgagaaagtgcagaacttcttcatcgataacattatcaaacacaccaattttcaacgggtactcaagaagcacaaccaacttcttgattctaaaactg 28006433  T
Q  174 atgtcttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtacacgagctctctttacaaat 273  Q
    || || ||||||||||||||||||||||||||||||||| | |||||||||  ||| |||||| ||||||  ||||| |||| |||||||||||||||||    
T  28006434 atctcatgaacaagctttggagtgcaaagagtacacaaaacgacattgacagtgaatcttcaactgccaaatctcagatacatgagctctctttacaaat 28006533  T
Q  274 t 274  Q
    |    
T  28006534 t 28006534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 63 - 274
Target Start/End: Complemental strand, 19482710 - 19482499
Alignment:
Q  63 tgaaggacttcgttgagaaagtatagaacttcatcaatgacaacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatcttga 162  Q
    ||||||| | ||||||||||||  |||||||| |||| |||||||||||||||||  | || |||||| ||||| |  | || |||||||||  ||||||    
T  19482710 tgaaggagtacgttgagaaagtgcagaacttcttcaaggacaacattatcaaacatgccacctctcaagaagtgatagagaagcacaaccaacttcttga 19482611  T
Q  163 ttcgaaaaccaatgtcttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtacacgagctc 262  Q
    ||| |||||  || || ||||||| |||| ||||||||||||| ||||||| ||||||||| |  ||||||||| |||||| ||| |  |||| ||||||    
T  19482610 ttctaaaactgatctcatgaacaaacttttgagtgcaaagagttcacaaactcacattgacgacaaaacttcaactgccaaagctaaaatacaggagctc 19482511  T
Q  263 tctttacaaatt 274  Q
    ||||| ||||||    
T  19482510 tctttgcaaatt 19482499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 274
Target Start/End: Original strand, 27350538 - 27350749
Alignment:
Q  63 tgaaggacttcgttgagaaagtatagaacttcatcaatgacaacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatcttga 162  Q
    ||||||| || |||||||||||  |||||||| |||||||||||||||| | |||| | |||||||||||| |  |||| || ||||| |||  ||||||    
T  27350538 tgaaggagtttgttgagaaagtgcagaacttcttcaatgacaacattatgagacacaccacttctcaacaactactcaagaagcacaatcaacttcttga 27350637  T
Q  163 ttcgaaaaccaatgtcttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtacacgagctc 262  Q
    || | ||||| |  |   |||||| |||  ||||||||  || |||||||||||||||||||  ||| |||||| ||||||||||||| |||| || |||    
T  27350638 tttggaaaccgagctgaggaacaaacttaagagtgcaactagcacacaaacccacattgacagtgaatcttcaactgccaatgctcagatacatgatctc 27350737  T
Q  263 tctttacaaatt 274  Q
    ||||||||||||    
T  27350738 tctttacaaatt 27350749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 272
Target Start/End: Original strand, 19477828 - 19478003
Alignment:
Q  96 tcaatgacaacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatcttgattcgaaaaccaatgtcttgaacaagctttggag 195  Q
    |||||||| | ||||||||| || | |||| |||||||||  |||| || | ||| |||  ||||||||| ||||||| | |  ||||||||||||||||    
T  19477828 tcaatgactatattatcaaatacgccacttttcaacaagtactcaagaagctcaatcaacttcttgattcaaaaacca-tctagtgaacaagctttggag 19477926  T
Q  196 tgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtacacgagctctctttacaaa 272  Q
    |||| | ||||||||||||| ||||||| | |||| ||||| ||||||||||| | || | ||||||||||||||||    
T  19477927 tgcatatagtacacaaacccgcattgaccatgaaatttcaactgccaatgctcggatagatgagctctctttacaaa 19478003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 75 - 274
Target Start/End: Original strand, 27380395 - 27380594
Alignment:
Q  75 ttgagaaagtatagaacttcatcaatgacaacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatcttgattcgaaaaccaa 174  Q
    ||||||||||  ||| |||| ||| ||||| |||||||||| |  | |||| |||||||||  | || || |||||||||  ||||||||| |||| | |    
T  27380395 ttgagaaagtgcagaccttcttcattgacatcattatcaaatataccacttttcaacaagtacttaagaagcacaaccaacttcttgattcaaaaagcga 27380494  T
Q  175 tgtcttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtacacgagctctctttacaaatt 274  Q
    | |  ||||||| |||||||||||| | ||||||||||||| ||||||| | |||| ||||| ||||||||||| | || | ||||||||||| ||||||    
T  27380495 tctagtgaacaaactttggagtgcatatagtacacaaacccgcattgaccatgaaatttcaactgccaatgctcggatagatgagctctcttttcaaatt 27380594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 26631871 - 26631929
Alignment:
Q  19 ccgtgcaacccgcattgcacggtgggaaaataatagttatgagttgaaggacttcgttg 77  Q
    |||||||| | |||||||||||||||||||||| | || ||||||||||||||||||||    
T  26631871 ccgtgcaatctgcattgcacggtgggaaaataaaacttctgagttgaaggacttcgttg 26631929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 27388158 - 27388088
Alignment:
Q  185 aagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtaca 255  Q
    ||||||| ||||||||||||||  |||  |||||||| ||  |||||||||| ||||||||||||| ||||    
T  27388158 aagcttttgagtgcaaagagtaagcaattccacattgtcagtgaaacttcaactgccaatgctcagataca 27388088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 63 - 274
Target Start/End: Complemental strand, 51150 - 50939
Alignment:
Q  63 tgaaggacttcgttgagaaagtatagaacttcatcaatgacaacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatcttga 162  Q
    ||||||| || |||||||||||  |||||||| |||||||||||||||| | || | | |||||||||||| |  |||  || ||||| |||  ||||||    
T  51150 tgaaggagtttgttgagaaagtgcagaacttcttcaatgacaacattatgagactcaccacttctcaacaactactcaggaagcacaatcaacttcttga 51051  T
Q  163 ttcgaaaaccaatgtcttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtacacgagctc 262  Q
    || ||||||| |  |  ||||||| |||  |||||||||||| ||||| ||||||||| |||| ||| |||||| ||||||||||||| |||| || |||    
T  51050 tttgaaaaccgagctgatgaacaaacttaagagtgcaaagagcacacagacccacattaacaatgaatcttcaactgccaatgctcagatacatgaactc 50951  T
Q  263 tctttacaaatt 274  Q
    ||||||||||||    
T  50950 tctttacaaatt 50939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 267
Target Start/End: Original strand, 30891 - 31080
Alignment:
Q  78 agaaagtatagaacttcatcaatgacaacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatcttgattcgaaaaccaatgt 177  Q
    |||||||  |||||||| ||||||||||||| ||||| ||  | |  |||||| ||||  |||| || |||||||||  |||| ||||||||||  || |    
T  30891 agaaagtgcagaacttcttcaatgacaacataatcaatcatgccatctctcaagaagtactcaagaagcacaaccaacttcttaattcgaaaactgatct 30990  T
Q  178 cttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtacacgagctctcttt 267  Q
    | ||||||| |||| ||||||||||||||||||||||||  ||||||| |||||||||| ||  ||||||||| |||| ||| |||||||    
T  30991 catgaacaaacttttgagtgcaaagagtacacaaacccatgttgacaatgaaacttcaactgttaatgctcagatacatgagatctcttt 31080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 267
Target Start/End: Original strand, 45749 - 45938
Alignment:
Q  78 agaaagtatagaacttcatcaatgacaacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatcttgattcgaaaaccaatgt 177  Q
    |||||||  |||||||| ||||||||||||| ||||| ||  | |  |||||| ||||  |||| || |||||||||  |||| ||||||||||  || |    
T  45749 agaaagtgcagaacttcttcaatgacaacataatcaatcatgccatctctcaagaagtactcaagaagcacaaccaacttcttaattcgaaaactgatct 45848  T
Q  178 cttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtacacgagctctcttt 267  Q
    | ||||||| |||| ||||||||||||||||||||||||  ||||||| |||||||||| ||  ||||||||| |||| ||| |||||||    
T  45849 catgaacaaacttttgagtgcaaagagtacacaaacccatgttgacaatgaaacttcaactgttaatgctcagatacatgagatctcttt 45938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 255
Target Start/End: Original strand, 29053 - 29234
Alignment:
Q  74 gttgagaaagtatagaacttcatcaatgacaacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatcttgattcgaaaacca 173  Q
    |||| ||||||  ||| |||| ||||||||| ||||| ||||||| | |||| ||||||| |  | || || || || |||  |||||||| |||| |||    
T  29053 gttgcgaaagtgaagaccttcttcaatgacatcattaacaaacacgccacttatcaacaactacttaagaagcataagcaacttcttgatttgaaaccca 29152  T
Q  174 atgtcttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtaca 255  Q
     | ||||||| ||||||| ||||||||||||||  |||  |||||||| ||  |||||||||||||||||||||||| ||||    
T  29153 gtctcttgaagaagcttttgagtgcaaagagtaggcaattccacattgtcagtgaaacttcaattgccaatgctcagataca 29234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 43994 - 44092
Alignment:
Q  157 tcttgattcgaaaaccaatgtcttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctcaggtaca 255  Q
    |||||||| |||| ||| | ||||||| ||||||| ||||||||||||||  |||  |||||||| ||  |||||||||||||||||||||||| ||||    
T  43994 tcttgatttgaaacccagtctcttgaagaagcttttgagtgcaaagagtaggcaattccacattgtcagtgaaacttcaattgccaatgctcagataca 44092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 6164507 - 6164379
Alignment:
Q  146 cacaaccaatatcttgattcgaaaaccaatgtcttgaacaagctttggagtgcaaagagtacacaaacccacattgacaaagaaacttcaattgccaatg 245  Q
    |||||||||  |||| ||||||||||  || |  ||||||||||| |||||||||||||||||| |||||| |||||||  ||| |||||| | | ||||    
T  6164507 cacaaccaacttctttattcgaaaactgatattatgaacaagcttaggagtgcaaagagtacactaacccaaattgacagtgaatcttcaactacaaatg 6164408  T
Q  246 ctcaggtacacgagctctctttacaaatt 274  Q
    ||||| ||||| | |||||||||||||||    
T  6164407 ctcagatacacaaactctctttacaaatt 6164379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 6164169 - 6164241
Alignment:
Q  63 tgaaggacttcgttgagaaagtatagaacttcatcaatgacaacattatcaaacactctacttctcaacaagt 135  Q
    ||||||| || ||||||| |||  |||||||| ||||||||||||||||||||||    ||||||||||||||    
T  6164169 tgaaggagtttgttgagatagtgcagaacttcttcaatgacaacattatcaaacaggacacttctcaacaagt 6164241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 248
Target Start/End: Original strand, 2488 - 2638
Alignment:
Q  98 aatgacaacattatcaaacactctacttctcaacaagtgttcaacaaacacaaccaatatcttgattcgaaaaccaatgtcttgaacaagctttggagtg 197  Q
    |||||| | ||||||||| || | ||||  ||||||||  |||| || |||||||||  ||||||||| |||||| || |  ||||||| ||||||||||    
T  2488 aatgactatattatcaaatacaccactttccaacaagtactcaagaagcacaaccaacttcttgattcaaaaaccgatctagtgaacaaactttggagtg 2587  T
Q  198 caaagagtacacaaacccacattgacaaagaaacttcaattgccaatgctc 248  Q
    || | ||||||||||||| ||||||| | |||| ||||| |||||||||||    
T  2588 catatagtacacaaacccgcattgaccatgaaatttcaactgccaatgctc 2638  T

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