View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18989_low_19 (Length: 213)
Name: NF18989_low_19
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18989_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 33901919 - 33901742
Alignment:
| Q |
19 |
atgcaattcacctgaaaaattgtaagtaacaagttagtttcctactcttgaaatggcaagttgagagaacaatggatgcatgcaattgccaatgttattt |
118 |
Q |
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| T |
33901919 |
atgcaattcacctgaaaaattgtaagtaacaagttagtttcctactgttgaaatggcaagttgagagaacaatggatgcatgcaattgccaatgttattt |
33901820 |
T |
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| Q |
119 |
actcaccttgtgtgcactttctaatgcttggccacctttgatcaacacaccttgagttgcaccaactccggtaccaac |
196 |
Q |
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| T |
33901819 |
actcaccttgtgtgcactttctaatgcttggccacctttgatcaacacaccttgagttgcaccaactccggtaccaac |
33901742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 33919339 - 33919264
Alignment:
| Q |
121 |
tcaccttgtgtgcactttctaatgcttggccacctttgatcaacacaccttgagttgcaccaactccggtaccaac |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33919339 |
tcaccttgtgtgcactttctaatgcttggccacctttgatcaacacaccttgagttgcaccaactccagtaccaac |
33919264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 2780998 - 2781071
Alignment:
| Q |
123 |
accttgtgtgcactttctaatgcttggccacctttgatcaacacaccttgagttgcaccaactccggtaccaac |
196 |
Q |
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| T |
2780998 |
accttatgtgcactttccaaagcttgcccccctttgatcaatacaccctgagatgcaccaactccagttccaac |
2781071 |
T |
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