View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18989_low_3 (Length: 519)
Name: NF18989_low_3
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18989_low_3 |
 | |
|
| [»] scaffold0006 (6 HSPs) |
| | |
|
Alignment Details
Target: scaffold0006 (Bit Score: 436; Significance: 0; HSPs: 6)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 17 - 499
Target Start/End: Original strand, 80268 - 80753
Alignment:
| Q |
17 |
agatagtaagcctttcaaaagttagtttttgtggtttatgtgaaattcttgcta---agttttaagcaaattcggatcccaacccatcaactcgcgttta |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
80268 |
agatagtaagcctttcaaaaggtagtttttgtggtttatgtgaaattcttgctactaagttttaagcaaattcggatcccaacccatcaactcgcattta |
80367 |
T |
|
| Q |
114 |
tcatatggctttgtattttggaggtatgtttcagttttactatttctagaggtttcattatttttaagttcgaatctacttttaacatctttgctttgtt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80368 |
tcatatggctttgtattttggaggtatgtttcagttttactatttctagaggtttcattatttttaagttcgaatctacttttaacatctttgctttgtt |
80467 |
T |
|
| Q |
214 |
caaattcatagggtgtattttttgagttttaatcatgattcaatattagtttgttagtaatgactgtgagtccgggttttgttcctttgttttatttgtt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80468 |
caaattcatagggtgtattttttgagttttaatcatgattcaatattagtttgttagtaatgactgtgagtccgggttttgttcctttgttttatttgtt |
80567 |
T |
|
| Q |
314 |
aatttgtcatttgactgaattgaaccttggtttcactcttatgatcaatatgcatctagtttatattatagtgaaattgtatgatattgagnnnnnnnng |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
80568 |
aatttgtcatttgactgaattgaaccttggtttcactcttatgatcaatatgcatctagtttatattatagtgaaattgtatgatattgagttttttttg |
80667 |
T |
|
| Q |
414 |
ttcacaggtgctctgaaaaataaagtgttatatgtattagtgacaatatatgtttgaaactttgcatactatatggatgattatgc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80668 |
ttcacaggtgctctgaaaaataaagtgttatatggattagtgacaatatatgtttgaaactttgcatactatatggatgattatgc |
80753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 50 - 379
Target Start/End: Original strand, 129077 - 129423
Alignment:
| Q |
50 |
gtttatgtgaaattcttg---ctaagttttaagcaaattcggatcccaacccatcaactcgcgtttatcatat-ggctttgtattttggaggtatgtttc |
145 |
Q |
| |
|
|||||||||||||| ||| |||| || ||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
129077 |
gtttatgtgaaattgttgttactaacttgtaagcaaattcggatcctaacccatcagctcgcgtttatcatattggctttgtattttggaggtatgtttc |
129176 |
T |
|
| Q |
146 |
agttttactatttctagaggtttcattatttttaagttcgaatctacttttaacatctttgctttgttcaaattcatagggtgtatttt----------- |
234 |
Q |
| |
|
|||||| |||||||||||| | |||||||||| |||| ||| || |||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
129177 |
agtttttctatttctagagttgcgattatttttatgttcaaatgtaaatttaacatctttgcttagttcaaattcgtagggtgtattttttttttttttg |
129276 |
T |
|
| Q |
235 |
ttgagttttaatcatgattcaatattagtttgttagtaatgactgtgagtccgggttttgttc--ctttgttttatttgttaatttgtcatttgactgaa |
332 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| ||||||| || |||||||||||||||||||| | ||||||||| ||||||| |||||||||| |||| |
|
|
| T |
129277 |
ttgagttttaatcttgaatcaatattagtttattagtaacgattgtgagtccgggttttgttcttcattgttttatatgttaatgtgtcatttgattgaa |
129376 |
T |
|
| Q |
333 |
ttgaaccttggtttcactcttatgatcaatatgcatctagtttatat |
379 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
129377 |
ttgaaccttggttgcactcttatgatcaatatgcatctagtttatat |
129423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 50 - 379
Target Start/End: Original strand, 215378 - 215719
Alignment:
| Q |
50 |
gtttatgtgaaattcttg---ctaagttttaagcaaattcggatcccaacccatcaactcgcgtttatcatat-ggctttgtattttggaggtatgtttc |
145 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
215378 |
gtttatgtgaaattgttgttactaagttgtaagcaaattcggatcctaacccatcagctcgcgtttatcatattggctttgtattttggaggtat-tttc |
215476 |
T |
|
| Q |
146 |
agttttactatttctagaggtttcattatttttaagttcgaatctacttttaacatctttgctttgttcaaattcatagggtgtatttt-------ttga |
238 |
Q |
| |
|
|||||| |||||||||||| | |||||||||| |||| ||| || |||||||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
215477 |
agtttttctatttctagagttgcgattatttttatgttcaaatgtaaatttaacatctttgcttagttcaaattcgtagggtgtatttttattttgttga |
215576 |
T |
|
| Q |
239 |
gttttaatcatgattcaatattagtttgttagtaatgactgtgagtccgggttttgttc--ctttgttttatttgttaatttgtcatttgactgaattga |
336 |
Q |
| |
|
|||||||| | | ||||||||| ||| ||||||| || |||||||||||||||||||| ||||||||||| | ||||| |||||||||| |||||||| |
|
|
| T |
215577 |
gttttaattttaaatcaatattaatttattagtaacgaatgtgagtccgggttttgttcttctttgttttatctattaatgtgtcatttgattgaattga |
215676 |
T |
|
| Q |
337 |
accttggtttcactcttatgatcaatatgcatctagtttatat |
379 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
215677 |
accttggttgcactcttatgatcaatatgcatctagtttatat |
215719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 495
Target Start/End: Original strand, 129480 - 129562
Alignment:
| Q |
414 |
ttcacaggtgctctgaaaaat-aaagtgttatatgtattagtgacaatatatgtttgaaactttgcatactatatggatgatt |
495 |
Q |
| |
|
|||| ||||||||||||||| |||||||| |||| || ||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
129480 |
ttcataggtgctctgaaaaaacaaagtgttgtatggatcagtaacaatatatgtttgaaactttgcatacaatatggatgatt |
129562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 382
Target Start/End: Complemental strand, 193478 - 193396
Alignment:
| Q |
299 |
tttgttttatttgttaatttgtcatttgactgaattgaaccttggtttcactcttatgatcaatatgcatctagtttatattat |
382 |
Q |
| |
|
|||||||||| ||||||| ||||||| || |||||||||||||| || || ||||| |||||||||||||||| |||| ||||| |
|
|
| T |
193478 |
tttgttttatctgttaatgtgtcatt-gattgaattgaaccttgtttccattcttacgatcaatatgcatctattttagattat |
193396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 495
Target Start/End: Original strand, 215779 - 215861
Alignment:
| Q |
414 |
ttcacaggtgctctgaaaaat-aaagtgttatatgtattagtgacaatatatgtttgaaactttgcatactatatggatgatt |
495 |
Q |
| |
|
|||| ||||||||||||||| |||||| | |||| || | | ||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
215779 |
ttcataggtgctctgaaaaaacaaagtgctgtatggatcaataacaatatatgttttaaactttgcatacaatatggatgatt |
215861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 17 - 404
Target Start/End: Original strand, 13483838 - 13484238
Alignment:
| Q |
17 |
agatagtaagcctttcaaaagttagtttttgtggtttatgtg-aaattcttgctaa---gttttaagcaaattcggatcccaacccatcaactcgcgttt |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| ||| ||||| ||| ||| || |||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
13483838 |
agatagtaagcctttcaaaaggcagtttttgtggattacgtgcaaattgttgttaataagtcgtaagcaaatttggatcccaaaccatcaactcgcgttt |
13483937 |
T |
|
| Q |
113 |
atcatatggctttgtattttggaggtatgtttcagttttactatttct---agaggtttcattatttttaa-gttcgaatctacttttaacatctttgct |
208 |
Q |
| |
|
|||| ||||||||||| |||||||||||| |||||| | ||| | || | |||||| ||||| ||| ||| || ||||||||||||||| |
|
|
| T |
13483938 |
gtcatctggctttgtataacggaggtatgtttaagttttttttttttgttgaaagttgtcattagttttattgtttcaatgtaaatttaacatctttgct |
13484037 |
T |
|
| Q |
209 |
ttgttcaaattcatagggtgtatttttt--gagttttaatcatgattcaatattagtttgttagtaatgactgtgagtccgggttttgttcct---ttgt |
303 |
Q |
| |
|
|||||||| ||| |||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| ||| | |||| |
|
|
| T |
13484038 |
ttgttcaatttcgtaggatgtattttttatgagttttaatcttgattcaagattagtttgttagtaatgattgtgagtccgggttttattcttattttgt |
13484137 |
T |
|
| Q |
304 |
tttatttgttaatttgtcatttgactgaattgaaccttggtttcactcttatgatcaatatgcatctagtttatattatagtgaaattgtatgatattga |
403 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
13484138 |
tttatctgttaatgtgtcatttgactgaattgaaccttggttgcactcttatgatcaatatgcatctagtttatatcatagtgaaattatatgatattga |
13484237 |
T |
|
| Q |
404 |
g |
404 |
Q |
| |
|
| |
|
|
| T |
13484238 |
g |
13484238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 87 - 379
Target Start/End: Original strand, 13600460 - 13600766
Alignment:
| Q |
87 |
ggatcccaacccatcaactcgcgtttatcatat-ggctttgtattttggaggtatgtttcagttttactatttctagaggtttcattatttttaagttcg |
185 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |||| |
|
|
| T |
13600460 |
ggatcctaacccatcagctcgcgtttatcatattggctttgtattttggaggtatgtttcagtttttctatttctagagttgcgattatttttatgttca |
13600559 |
T |
|
| Q |
186 |
aatctacttttaacatctttgctttgttcaaattcatagggtgtatttttt-----------gagttttaatcatgattcaatattagtttgttagtaat |
274 |
Q |
| |
|
||| || |||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
13600560 |
aatgtaaatttaacatctttgcttagttcaaattcgtagggtgtattttttttttttttgttgagttttaatcttgaatcaatattagtttattagtaac |
13600659 |
T |
|
| Q |
275 |
gactgtgagtccgggttttgttcct--ttgttttatttgttaatttgtcatttgactgaattgaaccttggtttcactcttatgatcaatatgcatctag |
372 |
Q |
| |
|
|| |||||||||||||||||||| | ||||||||| ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13600660 |
gattgtgagtccgggttttgttcttcattgttttatatgttaatgtgtcatttgattgaattgaaccttggttgcactcttatgatcaatatgcatctag |
13600759 |
T |
|
| Q |
373 |
tttatat |
379 |
Q |
| |
|
||||||| |
|
|
| T |
13600760 |
tttatat |
13600766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 51 - 342
Target Start/End: Complemental strand, 19155063 - 19154776
Alignment:
| Q |
51 |
tttatgtgaaattcttg---ctaagttttaagcaaattcggatcccaacccatcaactcgcgtttatcatatggctttgtattttggaggtatgtttcag |
147 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19155063 |
tttacgtgaaattcttgttactaagttttaagcaaattcggattctaacccatcaactcgcgtttatcatatggctttgtattttggaggtatgtttcag |
19154964 |
T |
|
| Q |
148 |
ttttactatttctagaggtttcattatttttaagttcgaatctacttttaacatctttgctttgttcaaattcatagggtgtattttt--tgagttttaa |
245 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||| | |||||||||||| |||||||| |
|
|
| T |
19154963 |
tttttctatttatagaggtttcattatttttatgttcgaatgtaaatttaacatctttgctttgttcaatttcgttgggtgtattttttatgagtttt-- |
19154866 |
T |
|
| Q |
246 |
tcatgattcaatattagtttgttagtaatgactgtgagtccgggttttg---ttcctttgttttatttgttaatttgtcatttgactgaattgaaccttg |
342 |
Q |
| |
|
|||||||||||||||||||||| |||||| | ||||||| ||| |||||||||||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
19154865 |
---------aatattagtttgttagtaatgattgtgagcctaggttttgttcttcttttgttttatttgttaatgtgtca-ttgattgaattgaaccttg |
19154776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 166 - 498
Target Start/End: Complemental strand, 16756951 - 16756632
Alignment:
| Q |
166 |
tttcattatttttaagttcgaatctacttttaacatctttgctttgttcaaattcatagggtgtattttttgagttttaatcatgattcaatattagttt |
265 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||||||||||||||||||||| | || ||||| |||||| |||||| |||||||| |
|
|
| T |
16756951 |
tttcattatttttatgttcgaatgtaaatttaacatctttgctttgttcaaattcgt----------ttatgagtcttaatcttgattcgatattagt-- |
16756864 |
T |
|
| Q |
266 |
gttagtaatgactgtgagtccgggttttgttcct---ttgttttatttgttaatttgtcatttgactgaattgaaccttggtttcactcttatgatcaat |
362 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | |||| |||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
16756863 |
gttagtaatgattgtgagtccgggttttgttcttcttttgtcttatttgttaatgtgtcatttgactgacttgaaccatggttgcactcttatgatcaat |
16756764 |
T |
|
| Q |
363 |
atgcatctagtttatattatagtgaaattgtatgatattgagnnnnnnnngttcacaggtgctctgaaaaataaagtgttatatgtattagtgacaatat |
462 |
Q |
| |
|
|||||| |||||||||| ||| |||||| ||||||||| || |||| ||||||||||||||| |||||| | |||| || |||| |||||| |
|
|
| T |
16756763 |
atgcatttagtttatatcataacgaaattatatgatattaagttttt----ttcataggtgctctgaaaaacaaagtgatgtatggatcagtgtcaatat |
16756668 |
T |
|
| Q |
463 |
atgtttgaaactttgcatactatatggatgattatg |
498 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16756667 |
atgtttgaaactttgcatactacatggatgattatg |
16756632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 495
Target Start/End: Original strand, 13600823 - 13600905
Alignment:
| Q |
414 |
ttcacaggtgctctgaaaaat-aaagtgttatatgtattagtgacaatatatgtttgaaactttgcatactatatggatgatt |
495 |
Q |
| |
|
|||| ||||||||||||||| |||||||| |||| || ||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13600823 |
ttcataggtgctctgaaaaaacaaagtgttgtatggatcagtaacaatatatgtttgaaactttgcatacaatatggatgatt |
13600905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 382
Target Start/End: Complemental strand, 13627719 - 13627637
Alignment:
| Q |
299 |
tttgttttatttgttaatttgtcatttgactgaattgaaccttggtttcactcttatgatcaatatgcatctagtttatattat |
382 |
Q |
| |
|
|||||||||| ||||||| ||||||| || |||||||||||||| || || ||||| |||||||||||||||| |||| ||||| |
|
|
| T |
13627719 |
tttgttttatctgttaatgtgtcatt-gattgaattgaaccttgtttgcattcttacgatcaatatgcatctactttagattat |
13627637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 13484298 - 13484344
Alignment:
| Q |
452 |
agtgacaatatatgtttgaaactttgcatactatatggatgattatg |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
13484298 |
agtgacaatatatgtttgaaactttgcatactatgtggataattatg |
13484344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 20575687 - 20575755
Alignment:
| Q |
302 |
gttttatttgttaatttgtcatttgactgaattgaaccttggtttcactcttatgatcaatatgcatcta |
371 |
Q |
| |
|
||||||| ||||||| ||||||| || |||||||||||||| || || ||||| |||||||||||||||| |
|
|
| T |
20575687 |
gttttatctgttaatgtgtcatt-gattgaattgaaccttgtttgcaatcttacgatcaatatgcatcta |
20575755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 382
Target Start/End: Complemental strand, 13562858 - 13562776
Alignment:
| Q |
299 |
tttgttttatttgttaatttgtcatttgactgaattgaaccttggtttcactcttatgatcaatatgcatctagtttatattat |
382 |
Q |
| |
|
|||||||||| ||||||| |||||| || |||||||||||||| || || ||||| ||||||| |||||||| |||| ||||| |
|
|
| T |
13562858 |
tttgttttatctgttaatgtgtcatc-gattgaattgaaccttgtttgcattcttacgatcaatgtgcatctattttagattat |
13562776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 13530566 - 13530524
Alignment:
| Q |
194 |
tttaacatctttgctttgttcaaattcatagggtgtatttttt |
236 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
13530566 |
tttaacatctttgctttgttcaatttcatggggtgtacttttt |
13530524 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 475
Target Start/End: Original strand, 20575822 - 20575884
Alignment:
| Q |
414 |
ttcacaggtgctctgaaaaat-aaagtgttatatgtattagtgacaatatatgtttgaaactt |
475 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||| || || ||||||||||||||||||||| |
|
|
| T |
20575822 |
ttcacatgtgctctgaaaaaacaaagtgttgtatgcatcagagacaatatatgtttgaaactt |
20575884 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 13446898 - 13446862
Alignment:
| Q |
194 |
tttaacatctttgctttgttcaaattcatagggtgta |
230 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
13446898 |
tttaacatctttgctttgttcaatttcatggggtgta |
13446862 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 13627836 - 13627800
Alignment:
| Q |
194 |
tttaacatctttgctttgttcaaattcatagggtgta |
230 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
13627836 |
tttaacatctttgctttgttcaatttcatggggtgta |
13627800 |
T |
|
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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 19154290 - 19154254
Alignment:
| Q |
459 |
atatatgtttgaaactttgcatactatatggatgatt |
495 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
19154290 |
atatatgtttgaaacttagcatacaatatggatgatt |
19154254 |
T |
|
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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 382
Target Start/End: Complemental strand, 21769081 - 21768999
Alignment:
| Q |
299 |
tttgttttatttgttaatttgtcatttgactgaattgaaccttggtttcactcttatgatcaatatgcatctagtttatattat |
382 |
Q |
| |
|
|||||||||| ||||||| |||||||| | | |||||||||||| || || ||| | |||||||||||||||| |||| ||||| |
|
|
| T |
21769081 |
tttgttttatctgttaatgtgtcattt-attaaattgaaccttgtttgcattctaacgatcaatatgcatctattttagattat |
21768999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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