View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18989_low_4 (Length: 488)
Name: NF18989_low_4
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18989_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 15 - 472
Target Start/End: Original strand, 39111220 - 39111677
Alignment:
| Q |
15 |
cagagaggcaagccacttcatggcccttttgttgcagcattgcttaatgacctttttggcattcaagctcgaggtgggtgtgcttgtgctggaccttatg |
114 |
Q |
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| T |
39111220 |
cagagaggcaagccacttcatggcccttttgttgcagcattgcttaatgacctttttggcattcaagctcgaggtgggtgtgcttgtgctggaccttatg |
39111319 |
T |
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| Q |
115 |
gacatgaattactcaacatcaataaatctcaatcactttctattagatcagctgttcaagaggtgaaaaatcatcttatttccttgatatttt-taggtt |
213 |
Q |
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| T |
39111320 |
gacatgaattactcaacatcaataaatctcaatcacttgctattagatcagctgttcaagaggtgaaaaatcatcttatttc-ttgatattttttaggtt |
39111418 |
T |
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| Q |
214 |
aaatgtttctttaatctatatcaagttttaagacttttcaatgcatttaaaagaaaaactaaaattgtttattgttttggatattttgctacagggctat |
313 |
Q |
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| T |
39111419 |
aaatgtttctttaatctatatgaagttttaagacttttcaatgcatttaaaagaaaaactaaaattgtttattgttttggatattttgctacagggctat |
39111518 |
T |
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| Q |
314 |
attggagtaaaacctggatggacaagagttagttttccttattacatgagtgaaagtgattttgattacattttaagtgcaatagagtttttagctgtat |
413 |
Q |
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| T |
39111519 |
attggagtaaaacctggatggacaagagttagttttccttattacatgagtgaaagtgattttgattacattttaagtgcaatagagtttttagctgtat |
39111618 |
T |
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| Q |
414 |
atggtcaaaggttctttcctctatatagcttcaacttgaggaatggaagttggagaatg |
472 |
Q |
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| T |
39111619 |
atggtcaaaggttctttcctctatatagcttcaacttgaggaatggaagttggacaatg |
39111677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 39105215 - 39105351
Alignment:
| Q |
42 |
tttgttgcagcattgcttaatgacctttttggcattcaagctcgaggtgggtgtgcttgtgctggaccttatggacatgaattactcaacatcaataaat |
141 |
Q |
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| T |
39105215 |
tttgttgcaacattgttaaacgatctctttggaatacaatctcgaggtgggtgtgcttgtgctggaccttacggacatgatttgctcaacatcaatgaat |
39105314 |
T |
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| Q |
142 |
ctcaatcactttctattagatcagctgttcaagaggt |
178 |
Q |
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| T |
39105315 |
ctcaatcgcttgccgttagatcagcaattcaagaggt |
39105351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 452
Target Start/End: Original strand, 39105562 - 39105699
Alignment:
| Q |
315 |
ttggagtaaaacctggatggacaagagttagttttccttattacatgagtgaaagtgattttgattacattttaagtgcaatagagtttttagctgtata |
414 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||||||||| ||| || ||||| | |||||||| | | ||||||||| || || |||| |
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| T |
39105562 |
ttggtgtaaaacccggatggaccagagttagttttccttattacatggatgaggaggaatttgagttcattttaacttccatagagtttgtatctatata |
39105661 |
T |
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| Q |
415 |
tggtcaaaggttctttcctctatatagcttcaacttga |
452 |
Q |
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||||||| ||||| |||| ||||| | |||||| |||| |
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| T |
39105662 |
tggtcaacggttccttccactatacaacttcaatttga |
39105699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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