View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18989_low_6 (Length: 438)
Name: NF18989_low_6
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18989_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 20014521 - 20014112
Alignment:
| Q |
19 |
aatgcgtgaactgtatgcactggtgagggacctcttatctcatagactaaacaaccacttcaggataaaacatgaatttctctctcttgccgatgctttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20014521 |
aatgcgtgaactgtatgcactggtgagggacctcttatctcacagactaaacaaccacttcaggataaaacatgaatttctctctcttgccgatgctttt |
20014422 |
T |
|
| Q |
119 |
gaaaccgcagctgttggtcttacccgtctaggtggtagtaaaatgacagttgaagaaggattcatttcaaaatcaaagttctttcgagacacatgtttgc |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20014421 |
gaatccgcagctgttggtcttacccgtctaggtggtagtaaaatgacagttgaagaaggattcatttcaaaatcaaagttctttcgagacacatgtttgc |
20014322 |
T |
|
| Q |
219 |
atttcacaaattcagagcacttcaactttttacatactctgataacaacagaagttttgtcctggcgggtactccacaatgtcctactctttgtattact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20014321 |
atttcacaaattcagagcacttcaactttttacatactctgataacaacagaagttttgtcctggcgggtactccacaatgtcctactctttgtattact |
20014222 |
T |
|
| Q |
319 |
tttgatgttatataatacaattgtttgacaatctttttggatgttttaatagctaattattgcattttgggccaagttcagtctaatcatttttaccatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20014221 |
tttgatgttatataatacaattgtttgacaatctttttggatgttttaatagctaattattgcattttgggccaagttcagtctaatcatttttaccatt |
20014122 |
T |
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| Q |
419 |
ttgttctctg |
428 |
Q |
| |
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|||||||||| |
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| T |
20014121 |
ttgttctctg |
20014112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 19702094 - 19702497
Alignment:
| Q |
19 |
aatgcgtgaactgtatgcactggtgagggacctcttatctcatagactaaacaaccacttcaggataaaacatgaatttctctctctt--gccgatgctt |
116 |
Q |
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||||| |||||||||| ||| | |||| ||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||| |||| ||| |
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| T |
19702094 |
aatgcatgaactgtatccacagctgagtgacctcttatcccatggattaaacaaccacttcaggataaaaca-gaatttctctctctctcgccgtcgcta |
19702192 |
T |
|
| Q |
117 |
ttgaaaccgcagctgttggtcttacccgtctaggtggt-agtaaaatgacagttgaagaaggattcatttcaaaatcaaagttctttcgagacacatgtt |
215 |
Q |
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||||| ||| |||||||||||||| |||| |||||| || ||||||||||| | ||||||||||||||||||| ||||||||| ||| | || | |
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| T |
19702193 |
ttgaatccgtgactgttggtcttaccggtcttggtggttagggaaatgacagttaacgaaggattcatttcaaaatgggagttctttcaagaagcgtgct |
19702292 |
T |
|
| Q |
216 |
tgcatttcacaaattcagagcacttcaactttttacatactctgataacaacagaagttttgtcctggcgggtactccacaatgtcctactctttgtatt |
315 |
Q |
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| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19702293 |
ttgatttcacaaattcagaacacttcaattttttacatactctgataacaacagaagtttt-acctggcgggtactccacaatgtcctactctttgtatt |
19702391 |
T |
|
| Q |
316 |
acttttgatgttatataatacaattgtttgacaatctttttggatgttttaatagctaattattgcattttgggccaagttcagtctaatcatttttacc |
415 |
Q |
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| | ||||||||||| |||||||||||||||||||| | |||| ||||||||||||||||||||| | |||| |||||||||||||||||| |
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| T |
19702392 |
a----ttatgttatataaagcaattgtttgacaatcttttaataagtttaggtagctaattattgcattttggtctaagtgtagtctaatcatttttacc |
19702487 |
T |
|
| Q |
416 |
attttgttct |
425 |
Q |
| |
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|||||||||| |
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|
| T |
19702488 |
attttgttct |
19702497 |
T |
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