View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1898_high_19 (Length: 253)

Name: NF1898_high_19
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1898_high_19
NF1898_high_19
[»] chr4 (15 HSPs)
chr4 (125-224)||(22343334-22343433)
chr4 (130-224)||(33249449-33249543)
chr4 (123-224)||(21260789-21260890)
chr4 (123-224)||(51811909-51812010)
chr4 (130-224)||(12473706-12473800)
chr4 (130-224)||(12528115-12528209)
chr4 (123-205)||(55590477-55590559)
chr4 (130-224)||(35869646-35869740)
chr4 (130-224)||(52012780-52012874)
chr4 (130-214)||(34829168-34829252)
chr4 (130-222)||(52910126-52910218)
chr4 (130-224)||(9799438-9799532)
chr4 (130-224)||(49999663-49999757)
chr4 (148-221)||(46719950-46720023)
chr4 (130-224)||(47943160-47943255)
[»] chr2 (9 HSPs)
chr2 (117-224)||(7381681-7381788)
chr2 (14-90)||(7381605-7381681)
chr2 (122-224)||(21603953-21604055)
chr2 (123-224)||(34392156-34392257)
chr2 (123-223)||(37357997-37358097)
chr2 (142-224)||(23863878-23863958)
chr2 (130-210)||(4775636-4775716)
chr2 (148-224)||(4779605-4779681)
chr2 (171-222)||(41095863-41095914)
[»] scaffold0032 (1 HSPs)
scaffold0032 (123-224)||(34189-34290)
[»] chr3 (16 HSPs)
chr3 (121-224)||(44380247-44380350)
chr3 (130-224)||(50934502-50934596)
chr3 (130-224)||(47186177-47186271)
chr3 (130-224)||(47426352-47426446)
chr3 (130-224)||(31187145-31187239)
chr3 (132-221)||(33509684-33509773)
chr3 (130-224)||(42664675-42664769)
chr3 (130-224)||(34029366-34029460)
chr3 (123-224)||(17466268-17466369)
chr3 (130-224)||(39498744-39498838)
chr3 (123-196)||(32319468-32319541)
chr3 (141-224)||(37742738-37742821)
chr3 (123-224)||(35094541-35094644)
chr3 (123-194)||(10179868-10179939)
chr3 (130-181)||(21963073-21963124)
chr3 (123-163)||(10123242-10123282)
[»] chr5 (14 HSPs)
chr5 (123-224)||(39570118-39570219)
chr5 (130-224)||(29989964-29990058)
chr5 (125-224)||(19357336-19357435)
chr5 (133-224)||(33858613-33858704)
chr5 (130-224)||(13015383-13015477)
chr5 (130-224)||(38010689-38010783)
chr5 (123-224)||(11607609-11607710)
chr5 (130-223)||(13086755-13086848)
chr5 (130-224)||(1826261-1826355)
chr5 (130-224)||(13421085-13421179)
chr5 (130-224)||(13478120-13478214)
chr5 (122-224)||(9827782-9827884)
chr5 (144-224)||(33271630-33271710)
chr5 (176-224)||(37881189-37881237)
[»] chr7 (7 HSPs)
chr7 (123-224)||(35341531-35341632)
chr7 (130-223)||(48250156-48250249)
chr7 (132-221)||(31306951-31307041)
chr7 (130-192)||(40856394-40856456)
chr7 (172-224)||(32694645-32694697)
chr7 (130-224)||(40893116-40893211)
chr7 (124-221)||(48072385-48072480)
[»] chr1 (13 HSPs)
chr1 (121-224)||(32676129-32676232)
chr1 (130-224)||(8809715-8809809)
chr1 (130-224)||(2569039-2569133)
chr1 (123-221)||(25161304-25161402)
chr1 (130-224)||(29119399-29119493)
chr1 (130-224)||(6223053-6223147)
chr1 (132-209)||(7214501-7214578)
chr1 (123-224)||(8462124-8462224)
chr1 (130-187)||(46435565-46435622)
chr1 (157-220)||(3688917-3688980)
chr1 (130-224)||(35998254-35998348)
chr1 (130-187)||(16679811-16679867)
chr1 (169-221)||(8555470-8555522)
[»] chr6 (6 HSPs)
chr6 (130-224)||(34245569-34245663)
chr6 (130-224)||(5403951-5404045)
chr6 (130-221)||(11113558-11113649)
chr6 (121-224)||(32644912-32645014)
chr6 (130-224)||(1211919-1212013)
chr6 (130-182)||(11753169-11753221)
[»] chr8 (8 HSPs)
chr8 (135-224)||(18168392-18168481)
chr8 (135-224)||(18631949-18632038)
chr8 (123-224)||(41179638-41179739)
chr8 (130-224)||(1514805-1514899)
chr8 (130-224)||(24337905-24337999)
chr8 (136-224)||(4708382-4708470)
chr8 (124-224)||(11254103-11254202)
chr8 (130-224)||(32825910-32826004)
[»] scaffold0229 (1 HSPs)
scaffold0229 (130-224)||(13081-13175)
[»] scaffold0519 (1 HSPs)
scaffold0519 (124-224)||(11191-11290)
[»] scaffold0263 (2 HSPs)
scaffold0263 (158-224)||(23174-23240)
scaffold0263 (130-187)||(23095-23152)
[»] scaffold0041 (1 HSPs)
scaffold0041 (130-224)||(73073-73168)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 22343334 - 22343433
Alignment:
125 attcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  || |||||||||||||||||| ||||||||||||||    
22343334 attccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatata 22343433  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 33249543 - 33249449
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    ||||||||||||||||||||  |||||||||||  |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
33249543 acttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgatata 33249449  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 21260789 - 21260890
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 222  Q
    |||||| |||| | ||||||||||||| ||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||||  |||||||||||    
21260789 ggattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgata 21260888  T
223 ta 224  Q
    ||    
21260889 ta 21260890  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 51811909 - 51812010
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 222  Q
    |||||| ||| |||||||||||||||||||| | |||||||||||| ||||||||||| || ||| |||||||||||||||||||||| ||| |||||||    
51811909 ggattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgata 51812008  T
223 ta 224  Q
    ||    
51812009 ta 51812010  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 12473706 - 12473800
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||| ||||||||||||| ||||||||||||  |||| |||||||||||||| ||| |||||||||||||||||| || ||||||||||||||    
12473706 acttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 12473800  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 12528115 - 12528209
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||| ||||||||||||| ||||||||||||  |||| |||||||||||||| ||| |||||||||||||||||| || ||||||||||||||    
12528115 acttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgatata 12528209  T

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Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 55590477 - 55590559
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttat 205  Q
    |||||| |||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||    
55590477 ggattccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgttactttat 55590559  T

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Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 35869740 - 35869646
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||| | |||| ||| ||||||||||||| |||||||  |||||||||||||    
35869740 acttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttgatata 35869646  T

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Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 52012780 - 52012874
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| ||||| ||||||  |||||||||| | |||||| ||| |||||||||||||||||||||  |||||||||||||    
52012780 acttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatata 52012874  T

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Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 34829252 - 34829168
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattcttt 214  Q
    |||| ||||| ||||||||| ||||| ||||||| | || ||||||| |||||||||| ||||||||||||||||||||| ||||    
34829252 acttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt 34829168  T

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Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 52910218 - 52910126
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 222  Q
    ||||||||||||| | |||| ||||| ||||||  |||| ||||||| |||||| ||| ||||||| ||||||||||||| ||||||||||||    
52910218 acttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata 52910126  T

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Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 9799532 - 9799438
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||| ||||||||||||| ||||| ||||||  |||||||||  ||| |||| ||| |||||||||||||||||||||  ||||||| |||||    
9799532 acttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatata 9799438  T

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Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 49999757 - 49999663
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    ||||||||||||| ||| ||  |||| ||| | | ||||  ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||    
49999757 acttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgatata 49999663  T

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Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 46719950 - 46720023
Alignment:
148 tatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 221  Q
    |||||||| ||||||  |||||||||| |||||||| ||| ||| ||||||||||||||||| |||||||||||    
46719950 tatcaatgttatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 47943160 - 47943255
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattatt-gaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    ||||||||||||||||  || ||||| |||||| |||| ||||||| | | |||| ||| ||||||| ||| |||||||||  |||||||||||||    
47943160 acttgtgtaccattaaaataccaatgttatataatatttgaccaataaaaatgtgccacataccaatattattttataaatattttatttgatata 47943255  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 7381681 - 7381788
Alignment:
117 ttttatggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttat 216  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||| ||||| |||||||||||||| ||  ||||||||||||||||||||||||||||    
7381681 ttttatggattccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttat 7381780  T
217 ttgatata 224  Q
    ||||||||    
7381781 ttgatata 7381788  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 7381605 - 7381681
Alignment:
14 attatacttagggggtgcttgatattcaatttgtgattacttttatttttatgaagttaatttgtgattacttattt 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
7381605 attatacttagggggtgcttgatattcaatttgtgattacttttatttttatgaagataatttgtgattacttattt 7381681  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 21603953 - 21604055
Alignment:
122 tggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 221  Q
    ||||||| |||||||||||||||||||| ||||||||||||  |||||||||||| ||||| |||| |||||||||||||||||||||  ||||||||||    
21603953 tggattccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttgat 21604052  T
222 ata 224  Q
    |||    
21604053 ata 21604055  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 34392257 - 34392156
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 222  Q
    |||||| |||||||||||||| ||||| ||||||||||||  |||| |||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||    
34392257 ggattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgata 34392158  T
223 ta 224  Q
    ||    
34392157 ta 34392156  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 37358097 - 37357997
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 222  Q
    |||||| ||||||||| |||||||||| ||||| ||||||  |||||| |||||||||||||||| || |||||||||||||||||| |||||||| |||    
37358097 ggattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaata 37357998  T
223 t 223  Q
    |    
37357997 t 37357997  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 23863958 - 23863878
Alignment:
142 ttaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||| |||||||||||  |||||  ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||    
23863958 ttaaggtaccaatggtatat--tattggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata 23863878  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 4775636 - 4775716
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaatt 210  Q
    |||| |||||||||||| || ||||| |||||||||||| ||||||||| ||| |||  ||||||| ||||||||| ||||    
4775636 acttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaatt 4775716  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 4779605 - 4779681
Alignment:
148 tatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    ||||||| |||||||  ||||| || ||| |||||| | | || |||||||||||||||||| ||||||||||||||    
4779605 tatcaatagtatataccattgatcacttatagtgtgccgcctaacaatgttactttataaatactttatttgatata 4779681  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 41095914 - 41095863
Alignment:
171 caattagagtgtgtcacttaccaatgttactttataaattctttatttgata 222  Q
    |||||||||||   ||| ||||||||||||||||||||| ||||||||||||    
41095914 caattagagtgcaccacctaccaatgttactttataaatgctttatttgata 41095863  T

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Target: scaffold0032 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 34189 - 34290
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 222  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||  |||||||||||    
34189 ggattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgata 34288  T
223 ta 224  Q
    ||    
34289 ta 34290  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 44380247 - 44380350
Alignment:
121 atggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttga 220  Q
    |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| || |||| ||||||||||||| ||||||||||    
44380247 atggattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttga 44380346  T
221 tata 224  Q
    ||||    
44380347 tata 44380350  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 50934502 - 50934596
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| ||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||| | ||||||||||||    
50934502 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgatata 50934596  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 47186177 - 47186271
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| ||||| ||||||  |||| ||||| |||||||| ||| ||||||||||||||||||||| ||||||||||||||    
47186177 acttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatata 47186271  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 47426352 - 47426446
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| |||| |||||||  |||| |||||||||||||||||| || ||||||||||||||| || ||||||||||||||    
47426352 acttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgatata 47426446  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 31187239 - 31187145
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||| ||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||    
31187239 acttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 31187145  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 33509684 - 33509773
Alignment:
132 ttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 221  Q
    ||||||||||||||||||  ||| |||||||| ||||||||||||||||||| ||| ||||||| |||||||||| || |||||||||||    
33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgat 33509773  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 42664675 - 42664769
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| ||| | ||||||  |||||||||| |||||||| ||| ||||||||||| |||||||||  |||||||||||||    
42664675 acttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatata 42664769  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 34029460 - 34029366
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||| ||||||||||||| ||||| ||||||  ||||| |||| |||||||| ||| ||| |||||||||||||||||  |||||||||||||    
34029460 acttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatata 34029366  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 17466268 - 17466369
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 222  Q
    |||||| | |||||||| ||| |  |||||||||||||||| ||||  ||||||||||||||||| || ||||||||||||||||||  |||| ||||||    
17466268 ggattccatttgtgtacgattcaaatatcaatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgata 17466367  T
223 ta 224  Q
    ||    
17466368 ta 17466369  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 39498838 - 39498744
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||| ||| ||||| ||||||||||||  |||||| |||||||||| || | |||||| |||||||||  ||||||| |||||    
39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatata 39498744  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 32319541 - 32319468
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatg 196  Q
    |||||| |||||||||||||||||||| ||||||||||||  |||| |||||||||||||| ||| ||| ||||    
32319541 ggattctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 37742738 - 37742821
Alignment:
141 attaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    ||||||||| ||||||||||||| ||||  |||||||||| || ||| |||||||||||| |||  ||| ||||||||||||||    
37742738 attaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatata 37742821  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 35094541 - 35094644
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaatta--gagtgtgtcacttaccaatgttactttataaattctttatttga 220  Q
    |||||| ||||  |||||||||| ||| || |||||||||  |||||| |||||  |||| || ||| |||||||||||||||||||||  |||||||||    
35094541 ggattccacttcagtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttga 35094640  T
221 tata 224  Q
    ||||    
35094641 tata 35094644  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 10179939 - 10179868
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaa 194  Q
    |||||| |||||||||||||||| ||| ||||||||||||  ||||  ||||||||||||| ||| ||||||    
10179939 ggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 21963124 - 21963073
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtg 181  Q
    |||| ||||||||||||||||||||| ||||||  |||||||||| ||||||    
21963124 acttatgtaccattaaggtatcaatgttatataacattgaccaataagagtg 21963073  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 10123282 - 10123242
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatat 163  Q
    |||||| |||||||||||||||| ||||||||| |||||||    
10123282 ggattccacttgtgtaccattaaagtatcaatgttatatat 10123242  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 39570219 - 39570118
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 222  Q
    |||||| ||||||||| |||||| ||||||||||||||||  |||| |||||||||||||||||| |||||||||||||||||||||  |||||||||||    
39570219 ggattccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgata 39570120  T
223 ta 224  Q
    ||    
39570119 ta 39570118  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 29989964 - 29990058
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||||||||| ||||||  |||||||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||    
29989964 acttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatata 29990058  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 19357435 - 19357336
Alignment:
125 attcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||| ||||||||||||||| |||| ||||||||||||  |||| |||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||    
19357435 attccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata 19357336  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 33858704 - 33858613
Alignment:
133 tgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    ||||||||||||||||| |||| |||||||| |||||||||||| |||||| ||| |||||||||||||||||||||  |||||||||||||    
33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatata 33858613  T

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Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 13015383 - 13015477
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||    
13015383 acttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgatata 13015477  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 38010783 - 38010689
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| ||||| ||||||  |||| ||||| |||||||| ||| ||||||||||||||||||||| ||||||||||||||    
38010783 acttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatata 38010689  T

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Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 11607710 - 11607609
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 222  Q
    |||||| |||||| ||||||||||||| ||||||||||||  |||||||||||| |||||| ||| ||||||| |||||||||||||  |||||||||||    
11607710 ggattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgata 11607611  T
223 ta 224  Q
    ||    
11607610 ta 11607609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 13086755 - 13086848
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatat 223  Q
    |||||||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||| ||||||||||| |||||||||  ||||||||||||    
13086755 acttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgatat 13086848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 1826261 - 1826355
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||| ||| ||||||||||||  ||||  ||||||||||||||||| ||||||| ||||||| || || ||||||||||||||    
1826261 acttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgatata 1826355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 13421179 - 13421085
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||||||||| ||||||  ||||| |||| ||||||| |||  || |||||||||||||||||| |||||||| |||||    
13421179 acttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaatata 13421085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 13478214 - 13478120
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||| | ||||| ||||||  |||||||||| |||||||| ||| ||||| |||||||||||||||  |||||||||||||    
13478214 acttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatata 13478120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 9827782 - 9827884
Alignment:
122 tggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 221  Q
    ||||||| |||||||||||||||||||| ||||||||||||   ||   ||||||||||||  ||| ||||||| |||||||||||||  ||||||||||    
9827782 tggattccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatttgat 9827881  T
222 ata 224  Q
    |||    
9827882 ata 9827884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 33271630 - 33271710
Alignment:
144 aaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||| ||||| ||||||| |||| |||||||||||||||||  || ||||||||||| |||||| ||||||||||||||    
33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatata 33271710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 37881189 - 37881237
Alignment:
176 agagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||| ||| |||||||||||||||||||||  |||||||||||||    
37881189 agagtgtgccacataccaatgttactttataaatattttatttgatata 37881237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 35341531 - 35341632
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 222  Q
    |||||| |||||||||||||||||||| ||||| ||||||  |||||||||||| |||||| ||| |||||||||||||||||||||  |||||||||||    
35341531 ggattccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgata 35341630  T
223 ta 224  Q
    ||    
35341631 ta 35341632  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 48250156 - 48250249
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatat 223  Q
    |||||||||||||||||||| ||||| ||||||| ||||  ||||||||||||| ||| |||||||||||||||||| || |||||||||||||    
48250156 acttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgatat 48250249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 31307041 - 31306951
Alignment:
132 ttgtgtaccattaaggtatcaatggtatatattattgaccaatt-agagtgtgtcacttaccaatgttactttataaattctttatttgat 221  Q
    |||||||||||||| ||||||||| ||||||| |||| |||||| | ||||||  || ||||||||||||||||||||| |||||||||||    
31307041 ttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 40856394 - 40856456
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttacc 192  Q
    |||| |||| ||||||||||  |||| ||||||||||||| ||||||||||||||||| ||||    
40856394 acttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacc 40856456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 32694697 - 32694645
Alignment:
172 aattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||  ||  || |||||||||||||||||||||||||||||||||    
32694697 aattagagtgtcccatctatcaatgttactttataaattctttatttgatata 32694645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 40893211 - 40893116
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattc-tttatttgatata 224  Q
    |||||| |||||| || |||| |||||||||||  ||||  |||||||| ||| |||  || |||||||||||||||||| | |||||||||||||    
40893211 acttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 40893116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 48072385 - 48072480
Alignment:
124 gattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 221  Q
    ||||| |||||||||| ||||||||| |||| |||||    ||||| ||||||||||||| ||| |  |||||||| |||||||||  ||||||||||    
48072385 gattccacttgtgtactattaaggtaccaatagtatacc--attgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgat 48072480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 32676129 - 32676232
Alignment:
121 atggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttga 220  Q
    |||||||| |||||||||||||||||||| ||||||||||||  |||| ||||||||| ||   ||| ||||||||||||||||||||| ||||||||||    
32676129 atggattccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttga 32676228  T
221 tata 224  Q
    ||||    
32676229 tata 32676232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 8809809 - 8809715
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| ||||| ||||||  |||||||||| |||||||| ||| |||||||||||||||||||||  |||||||||||||    
8809809 acttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatata 8809715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 2569039 - 2569133
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| ||||||||||||| |||  |||||||||||||| ||| |||||||||||| |||  ||| ||||||||||||||    
2569039 acttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatata 2569133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 25161304 - 25161402
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 221  Q
    |||||| |||||||||||||||| || |||||||||||||  |||||||||||| |||||| ||| || ||||||||||||||||||  ||||||||||    
25161304 ggattccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 29119493 - 29119399
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| ||||||||||||  |||| |||||||||||||| ||| || || |||||||||||| || ||||||||||||||    
29119493 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgatata 29119399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 6223053 - 6223147
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||| ||||||||| ||||||| ||||| ||||||  ||||||||  || |||||||| ||||||| |  |||||||||||||    
6223053 acttgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtcatatatcaatgttattttataagtattttatttgatata 6223147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 7214578 - 7214501
Alignment:
132 ttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaat 209  Q
    ||||||||||||||||||  ||| |||||||||||||  ||||||||||||||||| || | || |||||||||||||    
7214578 ttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcacctatcgatattactttataaat 7214501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 8462124 - 8462224
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 222  Q
    |||||| |||||||||  ||||| ||| ||||||||||||| ||||| |||||| |||||| ||| ||||||||||| |||||||||  ||||||| |||    
8462124 ggattccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaata 8462222  T
223 ta 224  Q
    ||    
8462223 ta 8462224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 46435622 - 46435565
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcac 187  Q
    |||||||||||||||||||| ||||||||||||  |||| |||||||||||| |||||    
46435622 acttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcac 46435565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 3688980 - 3688917
Alignment:
157 tatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttga 220  Q
    ||||||| ||||||||||||||||||   || |||||||||||||||||||||  |||||||||    
3688980 tatatatcattgaccaattagagtgtacaacctaccaatgttactttataaatgttttatttga 3688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 35998254 - 35998348
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||| ||||||||||||| ||||| ||||||  |||||  ||| |||||||| ||| || |||||||| ||||||| |  ||||||| |||||    
35998254 acttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagtgttttattttatata 35998348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 16679867 - 16679811
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcac 187  Q
    |||||||||||||||||||| ||||| |||||| ||||| ||||||||  ||||||||    
16679867 acttgtgtaccattaaggtaccaatgttatatactattg-ccaattaggatgtgtcac 16679811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 8555470 - 8555522
Alignment:
169 accaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 221  Q
    |||||||| | |||||||| ||||||||||| |||||||||  ||||||||||    
8555470 accaattaaaatgtgtcacataccaatgttattttataaatgttttatttgat 8555522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 34245569 - 34245663
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    ||||||||||||||||||||| |||| ||||||  |||||||||| | |||||| ||| ||||||||||||||||||||| ||||||||||||||    
34245569 acttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatata 34245663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 5404045 - 5403951
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    ||||||||||||||||||||  |||||||||||||||||  || ||||||| || ||| |||||||||||||||||| ||  |||||||||||||    
5404045 acttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgatata 5403951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 11113558 - 11113649
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgat 221  Q
    |||||||||||||||||||| ||||| ||||||  |||||| ||| |||||||||||| ||| ||||||||||| ||| | |||||||||||    
11113558 acttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat 11113649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 32645014 - 32644912
Alignment:
121 atggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttga 220  Q
    |||||||| || |||||||||||||| |||| || |||||||| |||| |||||||  ||||||||| ||| |||||||||||| |||| |||||||||     
32645014 atggattccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta-aaatactttatttgt 32644916  T
221 tata 224  Q
    ||||    
32644915 tata 32644912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 1212013 - 1211919
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| ||||||||||||  |||| | |||||| ||||| ||| |  ||||||||||||||  || ||||||||||||||    
1212013 acttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatata 1211919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 11753169 - 11753221
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgt 182  Q
    |||||||||||||||||||| ||||||||||||  || | |||||||||||||    
11753169 acttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgt 11753221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 18168392 - 18168481
Alignment:
135 tgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||  ||| ||||||| ||||||||||||| ||||||||||||||    
18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 18631949 - 18632038
Alignment:
135 tgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||  ||| ||||||| ||||||||||||| ||||||||||||||    
18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatata 18632038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 41179739 - 41179638
Alignment:
123 ggattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgata 222  Q
    |||||| |||||||||||||||||||| ||||| ||||||| |||| ||||||| |||||||||| |||| ||||||||||||||||  ||||||| |||    
41179739 ggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaata 41179640  T
223 ta 224  Q
    ||    
41179639 ta 41179638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 1514805 - 1514899
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| ||||| ||||||  ||||| |||| |||||||  ||| |||||||||||||||||||||  |||||||||||||    
1514805 acttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgatata 1514899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 24337999 - 24337905
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||| ||||||||| ||||||||||||  || |  ||||||||||||| ||  |||||||||||||||||| || ||||||||||||||    
24337999 acttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgatata 24337905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 4708470 - 4708382
Alignment:
136 gtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||| ||||||| |||||| |||||| ||   ||||||| |||||||||| |||||||||||||||||||||  |||||||||||||    
4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatata 4708382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 11254202 - 11254103
Alignment:
124 gattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatat 223  Q
    ||||| ||||||||||||||||  || ||||| ||||||| |||||||| ||| ||| |  ||| |||||||||||||||||||||  ||||||||||||    
11254202 gattccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatat 11254104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 32826004 - 32825910
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||| ||||||||| | ||||  |||| ||||||||||| |||||| || |||||||| ||||||  |  |||||||||||||    
32826004 acttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatata 32825910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 13175 - 13081
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||||||||||||||||| ||||||||||||  |||| | |||||| ||||| ||| |  ||||||||||||||  || ||||||||||||||    
13175 acttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgatata 13081  T

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Target: scaffold0519 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 11191 - 11290
Alignment:
124 gattcaacttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatat 223  Q
    ||||| ||||||||||||||||  || ||||| ||||||| |||||||| ||| ||| |  ||| |||||||||||||||||||||  ||||||||||||    
11191 gattccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatat 11289  T

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Target: scaffold0263 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 23240 - 23174
Alignment:
158 atatattattgaccaattagagtgtgtcacttaccaatgttactttataaattctttatttgatata 224  Q
    |||||| |||| |||||||||||||| ||| ||||||| |||||||||||||  |||||||||||||    
23240 atatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatata 23174  T

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Target: scaffold0263; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 23095 - 23152
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcac 187  Q
    ||||||||| |||||||||| |||||||||||| ||||| |||||||| || ||||||    
23095 acttgtgtatcattaaggtaccaatggtatatactattggccaattagggtctgtcac 23152  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 73073 - 73168
Alignment:
130 acttgtgtaccattaaggtatcaatggtatatattattgaccaattagagtgtgtcacttaccaatgttactttataaattc-tttatttgatata 224  Q
    |||||| |||||| || |||| |||||||||||  ||||  |||||||| ||| |||  || |||||||||||||||||| | |||||||||||||    
73073 acttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttgatata 73168  T

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