View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_high_21 (Length: 245)
Name: NF1898_high_21
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 44609068 - 44608835
Alignment:
| Q |
1 |
tgttgacataagtgagattcact----taacagtgttggtaaacctaaaaaggttcctacaaaacagttatagaggagtacnnnnnnnnccaaacgattt |
96 |
Q |
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| T |
44609068 |
tgttgacataagtgagattcactcacttaacagtgttggtaaacctaaaaaggttcctacaaaacagttatagaggagta-ttttttttccaaacgattt |
44608970 |
T |
|
| Q |
97 |
acaacacccaaatacatttctgaatgactgcaaaattaatgggaatgtacagactactatctcagcaagagctaacgttatggagttttaaaagttgtaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44608969 |
acaacacccaaatacatttctgaatgactgcaaaattaatgggaatgtacagactactatctcagcaagagctaacgttatggagttttaaaagttgtaa |
44608870 |
T |
|
| Q |
197 |
cagtggtgcctctaggcaatttttatgtttcatct |
231 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
44608869 |
cagtggtgcctctaggcaatttttatgtttcatct |
44608835 |
T |
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