View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1898_high_22 (Length: 245)
Name: NF1898_high_22
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_high_22 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 53 - 245
Target Start/End: Complemental strand, 38033476 - 38033284
Alignment:
| Q |
53 |
tatcgaacaatatctatattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggc |
152 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38033476 |
tatcgaacaatatctaaattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggc |
38033377 |
T |
|
| Q |
153 |
ctaataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaannnnnnnacatgtccattgcttctatcaa |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38033376 |
ctaataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaa |
38033284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 56 - 245
Target Start/End: Complemental strand, 38028439 - 38028250
Alignment:
| Q |
56 |
cgaacaatatctatattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggccta |
155 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38028439 |
cgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggccta |
38028340 |
T |
|
| Q |
156 |
ataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaannnnnnnacatgtccattgcttctatcaa |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38028339 |
ataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaa |
38028250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 50910450 - 50910577
Alignment:
| Q |
82 |
tataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggcctaataataaaacattcagccaaattata |
181 |
Q |
| |
|
||||||||||||||||| | || | ||||||| ||| ||||||| | ||||||||||||||||||| |||||||| |||||||||||||||| || | |
|
|
| T |
50910450 |
tataatgatgacataagagaatgtgctgtaagcaatatcgagct-cgaatattcctgcaaatttct--ggcctaat---aaaacattcagccaaactaaa |
50910543 |
T |
|
| Q |
182 |
atagttgataggttatcttagatctaagctcacaa |
216 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||| |
|
|
| T |
50910544 |
gtagttgataag-tatcttggatctaagctcacaa |
50910577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 216
Target Start/End: Complemental strand, 38036444 - 38036314
Alignment:
| Q |
81 |
ttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggcctaataataaaacattcagccaaattat |
180 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||| | | ||||| | | |||||||||||||||||||||| | ||||||| ||||||||||||| ||| |
|
|
| T |
38036444 |
ttataatgatgagataagggtatgtgctgtaagcagtatcgagat-cgaatattcctgcaaatttctctgac---ataataacacattcagccaaactat |
38036349 |
T |
|
| Q |
181 |
aatagttgataggttatcttagatctaagctcacaa |
216 |
Q |
| |
|
||||| ||| | |||||| |||| |||||||||| |
|
|
| T |
38036348 |
-atagtgtataagctatcttggatcaaagctcacaa |
38036314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 56 - 245
Target Start/End: Complemental strand, 21604427 - 21604238
Alignment:
| Q |
56 |
cgaacaatatctatattttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggccta |
155 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21604427 |
cgaacaatatctaaattttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggccta |
21604328 |
T |
|
| Q |
156 |
ataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaannnnnnnacatgtccattgcttctatcaa |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21604327 |
ataataaaacattcagccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaa |
21604238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University