View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_high_29 (Length: 222)
Name: NF1898_high_29
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28932366 - 28932145
Alignment:
| Q |
1 |
tattagtatcttaaaatatatacaagcaatatctcaacttgatgcaaaactaaatccaattcnnnnnnnttgttgtgtgtggacattaatcacaacctga |
100 |
Q |
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| T |
28932366 |
tattagtatcttaaaatatatacaagcaatatctcaacttgatgcaaaactaaatccaattcaaaaaaattgttgtgtgtggacattaatcacaacctga |
28932267 |
T |
|
| Q |
101 |
acttaatgtagtcaaccattttgttttgagatttatatacgatataacaacttatagtgtttacgtcacttatttttccttataaca-tattcaattttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || | | || |||||| |
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| T |
28932266 |
acttaatgtagtcaaccattttgttttgagatttatatacgatataccaacttatagtttttacgtcacttatttttccttaaaaaaatgttacattttt |
28932167 |
T |
|
| Q |
200 |
attgattatatatcttaagatt |
221 |
Q |
| |
|
||||||||| |||||| ||||| |
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|
| T |
28932166 |
attgattatgtatcttgagatt |
28932145 |
T |
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