View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_high_4 (Length: 490)
Name: NF1898_high_4
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 14 - 474
Target Start/End: Complemental strand, 2833155 - 2832695
Alignment:
| Q |
14 |
attcttaaccgtattaggttggaaattattaaattaacataacatgattggatgagaaattgtgtttggtgatgtaacttcaggtgttacaatcaggggt |
113 |
Q |
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| T |
2833155 |
attcttaaccgtattaggttggaaattattaaattaacataacatgattggatgagaaattgtgtttggtgatgtaacttcaggtgttacaatcaggggt |
2833056 |
T |
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| Q |
114 |
ggatgcattggtgttgtcaatagttcctggtgacattggaagaccaacaaaaagattagagaaagctgcggttcaagatggaaattgtcggtgggagaat |
213 |
Q |
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| T |
2833055 |
ggatgcattggtgttgtcaatagttcctggtgacattggaagaccaacaaaaagattagagaaagctacggttcaagatggaaattgtcggtgggagaat |
2832956 |
T |
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| Q |
214 |
ccggtatacgaaacagtcaagtattatcaggatccgaagaccggagaaatcaacgataaaatatataaatttttgctctcaacggtatataaaaatttct |
313 |
Q |
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| T |
2832955 |
ccggtatacgaaacagtcaagtattatcaggatccgaagaccagagaaatcaacgataaaatatataaatttttgctctcaacggtatataaaaatttct |
2832856 |
T |
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| Q |
314 |
ctcttcataagtactagtaattgttaattcgtttacttttgtcattgttatataatttttggggttatatgcaggggttatcaaaagctagcgccgtcgg |
413 |
Q |
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| T |
2832855 |
ctcttcataagtactagtaattgttaattcgtttacttttgtcattgttatataatttttggggttatatgcaggggttatcaaaagctagcgccgtcgg |
2832756 |
T |
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| Q |
414 |
ggaggtttctgtgaactttgctgattatgtagatgccacaaagccttcccatgtctctctt |
474 |
Q |
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| T |
2832755 |
ggaggtttctgtgaactttgctgattatgtagatgccacaaagccttcccatgtctctctt |
2832695 |
T |
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