View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1898_low_1 (Length: 800)

Name: NF1898_low_1
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1898_low_1
NF1898_low_1
[»] chr3 (74 HSPs)
chr3 (43-781)||(27390559-27391297)
chr3 (151-256)||(21869347-21869455)
chr3 (151-254)||(39580399-39580505)
chr3 (151-250)||(959353-959455)
chr3 (151-254)||(39674663-39674769)
chr3 (132-254)||(41530159-41530289)
chr3 (151-254)||(42864771-42864875)
chr3 (131-256)||(25041818-25041951)
chr3 (321-524)||(18025247-18025448)
chr3 (151-254)||(29360246-29360353)
chr3 (359-551)||(27377438-27377635)
chr3 (568-680)||(27919757-27919870)
chr3 (568-679)||(28149173-28149284)
chr3 (573-679)||(28036855-28036961)
chr3 (552-679)||(12147118-12147248)
chr3 (178-254)||(4533985-4534064)
chr3 (552-678)||(27377663-27377792)
chr3 (612-679)||(27979932-27979999)
chr3 (571-666)||(28054936-28055031)
chr3 (571-666)||(28065361-28065456)
chr3 (347-552)||(1366856-1367055)
chr3 (451-524)||(27459608-27459681)
chr3 (568-679)||(26630753-26630865)
chr3 (569-677)||(27379345-27379453)
chr3 (456-524)||(27919615-27919683)
chr3 (456-524)||(27979743-27979811)
chr3 (456-552)||(28003461-28003557)
chr3 (456-524)||(28036704-28036772)
chr3 (556-676)||(27348327-27348450)
chr3 (568-678)||(28084463-28084574)
chr3 (612-674)||(28083063-28083125)
chr3 (613-674)||(18077110-18077171)
chr3 (177-237)||(53330248-53330311)
chr3 (177-237)||(53333932-53333995)
chr3 (177-237)||(53337609-53337672)
chr3 (453-513)||(26179552-26179612)
chr3 (461-513)||(26235983-26236035)
chr3 (568-664)||(27350006-27350102)
chr3 (619-679)||(28005300-28005360)
chr3 (598-674)||(28161397-28161473)
chr3 (598-674)||(28185239-28185315)
chr3 (465-552)||(28005119-28005206)
chr3 (451-513)||(26129502-26129564)
chr3 (556-625)||(18025161-18025230)
chr3 (164-209)||(22976273-22976318)
chr3 (601-678)||(28003639-28003716)
chr3 (612-676)||(8539674-8539738)
chr3 (618-677)||(27389193-27389252)
chr3 (456-507)||(28151203-28151254)
chr3 (134-204)||(51360636-51360711)
chr3 (451-513)||(26128198-26128260)
chr3 (451-513)||(26178248-26178310)
chr3 (451-513)||(26630609-26630671)
chr3 (612-674)||(28135435-28135497)
chr3 (469-513)||(8539829-8539873)
chr3 (454-522)||(19476134-19476202)
chr3 (627-674)||(18079196-18079243)
chr3 (419-513)||(26202085-26202178)
chr3 (471-513)||(28135287-28135329)
chr3 (582-679)||(26629085-26629182)
chr3 (555-615)||(1366772-1366832)
chr3 (625-677)||(17745035-17745087)
chr3 (625-677)||(19046355-19046407)
chr3 (461-513)||(26140144-26140196)
chr3 (476-524)||(28084341-28084389)
chr3 (628-679)||(26128009-26128060)
chr3 (628-679)||(26139955-26140006)
chr3 (628-679)||(26178059-26178110)
chr3 (451-489)||(11420327-11420365)
chr3 (470-524)||(19483608-19483662)
chr3 (47-85)||(22976693-22976731)
chr3 (613-678)||(11420520-11420585)
chr3 (713-778)||(28149357-28149422)
chr3 (158-195)||(30552479-30552516)
[»] chr7 (14 HSPs)
chr7 (132-254)||(26279411-26279541)
chr7 (132-254)||(22204789-22204919)
chr7 (151-254)||(22229844-22229950)
chr7 (151-267)||(25444113-25444232)
chr7 (132-254)||(40819397-40819526)
chr7 (152-254)||(22293350-22293455)
chr7 (151-256)||(45281320-45281428)
chr7 (151-242)||(30948065-30948159)
chr7 (132-267)||(19927708-19927850)
chr7 (151-254)||(15042727-15042833)
chr7 (618-674)||(8692642-8692698)
chr7 (46-80)||(15043192-15043226)
chr7 (23-72)||(22205248-22205297)
chr7 (23-72)||(22229442-22229491)
[»] chr8 (10 HSPs)
chr8 (132-256)||(17630624-17630756)
chr8 (151-254)||(10861273-10861379)
chr8 (151-254)||(17068681-17068787)
chr8 (132-254)||(17579486-17579616)
chr8 (151-254)||(20289845-20289951)
chr8 (151-254)||(21076475-21076581)
chr8 (151-254)||(29055071-29055177)
chr8 (132-254)||(34964212-34964342)
chr8 (132-254)||(44718039-44718169)
chr8 (132-254)||(3046238-3046365)
[»] scaffold0017 (1 HSPs)
scaffold0017 (132-254)||(37515-37645)
[»] chr5 (6 HSPs)
chr5 (151-254)||(6666202-6666308)
chr5 (151-254)||(8871750-8871856)
chr5 (132-254)||(13854159-13854289)
chr5 (151-254)||(36606647-36606753)
chr5 (151-260)||(32659427-32659539)
chr5 (183-244)||(28063854-28063917)
[»] chr2 (6 HSPs)
chr2 (132-254)||(14313851-14313981)
chr2 (151-254)||(14811782-14811888)
chr2 (151-254)||(13043294-13043395)
chr2 (447-534)||(22392460-22392547)
chr2 (551-676)||(22392591-22392719)
chr2 (568-677)||(22394322-22394431)
[»] chr6 (5 HSPs)
chr6 (151-254)||(21112602-21112708)
chr6 (151-256)||(1413862-1413972)
chr6 (151-254)||(8862537-8862642)
chr6 (132-254)||(9149671-9149801)
chr6 (151-254)||(34752401-34752507)
[»] chr1 (5 HSPs)
chr1 (151-256)||(3365966-3366074)
chr1 (155-267)||(22150136-22150251)
chr1 (189-254)||(1608509-1608577)
chr1 (151-210)||(23205698-23205757)
chr1 (46-75)||(22150619-22150648)
[»] chr4 (5 HSPs)
chr4 (151-254)||(26261686-26261793)
chr4 (151-254)||(32761035-32761141)
chr4 (151-225)||(54260621-54260695)
chr4 (183-250)||(51161612-51161683)
chr4 (49-85)||(26261157-26261193)
[»] scaffold1142 (2 HSPs)
scaffold1142 (428-524)||(1304-1400)
scaffold1142 (615-677)||(1518-1580)
[»] scaffold0043 (4 HSPs)
scaffold0043 (448-551)||(53847-53950)
scaffold0043 (551-676)||(53692-53820)
scaffold0043 (615-677)||(51975-52037)
scaffold0043 (321-406)||(54012-54097)
[»] scaffold0257 (2 HSPs)
scaffold0257 (568-674)||(18593-18700)
scaffold0257 (713-771)||(18748-18806)
[»] scaffold1163 (1 HSPs)
scaffold1163 (637-677)||(1-41)


Alignment Details
Target: chr3 (Bit Score: 687; Significance: 0; HSPs: 74)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 43 - 781
Target Start/End: Complemental strand, 27391297 - 27390559
Alignment:
Q  43 acggatacttctgtcttacatatttccttttaataaaagaatatgaaataaaatcacataaagatgggcaatgctatcaaatttgtctg--aaaaatatg 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  27391297 acggatacttctgtcttacatatttccttttaataaaagaatatgaaataaaattacataaagatgggcaatgctatcaaatttgtctggaaaaaatatg 27391198  T
Q  141 taattctcacttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatactaattttaaatttaatt 240  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27391197 taattgtcacttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatactaattttaaatttaatt 27391098  T
Q  241 ttttaataacgtattgtatccgtatcgggtcttcatagctactgcttttgttcttattacaggaattgacgaaccaacagcatttacaaggagaaattga 340  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27391097 ttttaataacttatcgtatccgtatcgggtcttcatagctactgcttttgttcttattacaggaattgacgaaccaacagcatttacaaggagaaattga 27390998  T
Q  341 tgccagcatcaaaccttttcatggaaataataatgtaatatagcagcaccacattgtgcatataaagctacagattaaaaatattaaagaaaataaattt 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  27390997 tgccagcatcaaaccttttcatggaaataataatgtaatatagcagcaccacattgtgcatataaagctacagattaaa--tattaaagaaaataaattt 27390900  T
Q  441 taatggaacaactacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtcagaaagacttgtagcagaatc 540  Q
    || |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27390899 tactggaacaactgcttaataatatgctgcaactaatttaaattttcatgttatgcaattagttggagggttcaccgtcagaaagacttgtagcagaatc 27390800  T
Q  541 tttgtccaccatacaagtcattgatagtaaacaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaattatac 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27390799 tttgtccaccatacaagtcattgatagtaaacaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaattatac 27390700  T
Q  641 tacaatcttaaacatccttttaattttaagcagggtatcattgaaggaactgcattaactaataccaagacaacttctaaggaaataacaacttcacagg 740  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27390699 tacaatcttaaacatccttttaattttaagcagggtatcattgaagaaactgcattaactaataccaagacaacttctaaggaaataacaacttcacagg 27390600  T
Q  741 tgattttattttatgtaacaatgccttcaaattgacatgaa 781  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27390599 tgattttattttatgtaacaatgccttcaaattgacatgaa 27390559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 21869347 - 21869455
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||    
T  21869347 ttgatcattttcattaatgtaaatgtttgtttattatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaat 21869446  T
Q  248 aacgtattg 256  Q
    |||||||||    
T  21869447 aacgtattg 21869455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 39580399 - 39580505
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||    
T  39580399 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaat 39580498  T
Q  248 aacgtat 254  Q
    |||||||    
T  39580499 aacgtat 39580505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 151 - 250
Target Start/End: Original strand, 959353 - 959455
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||    
T  959353 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaat 959452  T
Q  248 aac 250  Q
    |||    
T  959453 aac 959455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 39674663 - 39674769
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||   ||||||||||||||| ||||||||    
T  39674663 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaaatttttaat 39674762  T
Q  248 aacgtat 254  Q
    |||||||    
T  39674763 aacgtat 39674769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 41530289 - 41530159
Alignment:
Q  132 aaaaatatgtaattctcac-----ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac--- 223  Q
    |||||||||||||| ||||     ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||       
T  41530289 aaaaatatgtaattgtcacttgctttgatcattttcattaatgtgaatgtttgattattatcatttgtagttatgtttatacattgtgcacttatactat 41530190  T
Q  224 taattttaaatttaattttttaataacgtat 254  Q
    |||||||||||||||||||||||||| ||||    
T  41530189 taattttaaatttaattttttaataatgtat 41530159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 42864771 - 42864875
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcactta-tactaattttaaatttaattttttaataa 249  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||    
T  42864771 ttgatcattttcattaatgtgaatgtttgtttatcttcatttttagttatgtttatacattgtgcacatactattaattttaaatttaattttttaataa 42864870  T
Q  250 cgtat 254  Q
    |||||    
T  42864871 cgtat 42864875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 25041818 - 25041951
Alignment:
Q  131 gaaaaatatgtaattctcacttg-----atcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac-- 223  Q
    ||||||||||||||| |||||||     |||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| |||||||||||      
T  25041818 gaaaaatatgtaattgtcacttgttttgatcattttcattaaggtgaatgtttgtttctcatcatttttagttatgtttatacattgtgcacttatacta 25041917  T
Q  224 -taattttaaatttaattttttaataacgtattg 256  Q
     ||||||| |||||||||||||||||||||||||    
T  25041918 ttaattttcaatttaattttttaataacgtattg 25041951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 321 - 524
Target Start/End: Complemental strand, 18025448 - 18025247
Alignment:
Q  321 catttacaaggagaaattgatgccagcatcaaaccttttcatggaaataataatgtaatatagcagcaccacattgtgcatataaagctacagattaaaa 420  Q
    ||||| || ||||||||||||  || ||||||||||| |||  ||||||||||| | |||||| | ||||  ||  |||||||||||||| | || |||     
T  18025448 cattttcatggagaaattgatagcaccatcaaaccttctcacagaaataataatttcatatagtaccaccgaatcttgcatataaagctaaaaatgaaa- 18025350  T
Q  421 atattaaagaaaataaattttaatggaacaactacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtca 520  Q
     |||| ||||||||  |||||| |  ||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||| | ||||||| |||    
T  18025349 -tatttaagaaaatttattttattctaacaactacttaaaactatgctgcaactaatttacattttcatgctatgcaatcagttggcgagttcaccatca 18025251  T
Q  521 gaaa 524  Q
    ||||    
T  18025250 gaaa 18025247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 29360246 - 29360353
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcact-----tatactaattttaaatttaatttttta 245  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |     |||| ||||||||||||||||||||||    
T  29360246 ttgatcattttcattaatgtcaatgtttgtttattatca-ttttagttatgtttatacattgtgcatttataatatattaattttaaatttaatttttta 29360344  T
Q  246 ataacgtat 254  Q
    |||||||||    
T  29360345 ataacgtat 29360353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 359 - 551
Target Start/End: Original strand, 27377438 - 27377635
Alignment:
Q  359 tcatggaaataataatgtaatatagcagcaccacattgtgcatataaagctacagattaaaaatattaaagaaaataaattttaatggaaca-------a 451  Q
    |||||||||||| | |||||| ||||| |||| |||||||||||| |||||| | || ||   ||||||||||||||||||||| |  ||||       |    
T  27377438 tcatggaaataaaattgtaatttagcaccacctcattgtgcatattaagctaaaaatcaag--tattaaagaaaataaattttactctaacaggtagcaa 27377535  T
Q  452 ctacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtcagaaagacttgtagcagaatctttgtccacca 551  Q
    |||||||| ||||| |||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||| || |||||| |||   ||||||||||    
T  27377536 ctacttaaaaatattctgcaactaatttatattttcatgctatgcaattagttggaggattcaacgtcagaaaaacctgtagcggaactgttgtccacca 27377635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 568 - 680
Target Start/End: Original strand, 27919757 - 27919870
Alignment:
Q  568 taaacaaaaggcatttcctct-attttgcctgtattttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattt 666  Q
    |||||||||||||||||| || ||||| | |||||| ||| | | |||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||    
T  27919757 taaacaaaaggcatttcccctcatttttcttgtattatttttaacactttttcaatgtaggaattgaattatactacaatcttcaacatccatttaattt 27919856  T
Q  667 taagcagggtatca 680  Q
    ||||||||||||||    
T  27919857 taagcagggtatca 27919870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 568 - 679
Target Start/End: Original strand, 28149173 - 28149284
Alignment:
Q  568 taaacaaaaggcatttcctctattttgcctgtattttttctgaa-actttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattt 666  Q
    ||||||||||||||||||   |||||||  ||||| ||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  28149173 taaacaaaaggcatttccctcattttgctagtattcttt-tgaacactttgtcaatgcaggaattgaattatactacaatcttaaacatccatttaattt 28149271  T
Q  667 taagcagggtatc 679  Q
    |||||||||||||    
T  28149272 taagcagggtatc 28149284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 573 - 679
Target Start/End: Original strand, 28036855 - 28036961
Alignment:
Q  573 aaaaggcatttcctct-attttgcctgtattttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagc 671  Q
    ||||||||||||| || ||||||  |||||||||| ||| || ||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||    
T  28036855 aaaaggcatttccactcattttggttgtatttttt-tgacaccttttcaatgtaggaattgaattatactacaatcttaaacatccatttaattttaagc 28036953  T
Q  672 agggtatc 679  Q
    ||||||||    
T  28036954 agggtatc 28036961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 552 - 679
Target Start/End: Original strand, 12147118 - 12147248
Alignment:
Q  552 tacaagtcattgatagtaaacaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaat----tatactacaatc 647  Q
    ||||||| ||||||  |||||||||||||||||||||||||||| |||||||  ||||| |||||| |||||||||||||  ||    |||||||||| |    
T  12147118 tacaagtgattgatcataaacaaaaggcatttcctctattttgcttgtatttactctgacacttttccaatgcaggaattgtattatatatactacaaac 12147217  T
Q  648 ttaaacatccttttaattttaagcagggtatc 679  Q
    | |||||||| |||||||||||||||||||||    
T  12147218 tgaaacatcc-tttaattttaagcagggtatc 12147248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 4533985 - 4534064
Alignment:
Q  178 tgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaataacgtat 254  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||    
T  4533985 tgtttatcatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaataacgtat 4534064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 552 - 678
Target Start/End: Original strand, 27377663 - 27377792
Alignment:
Q  552 tacaagtcattgatagtaaacaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaat----tatactacaatc 647  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||  |||||| |||||| |||||| ||||||||||||| |||    |||||||||  |    
T  27377663 tacaagtgattgatcataaacaaaaggcatttcctctattttgctcgtatttattctgacacttttccaatgcaggaattgaattatatatactacagac 27377762  T
Q  648 ttaaacatccttttaattttaagcagggtat 678  Q
    | |||||||| ||||||||||||||||||||    
T  27377763 tgaaacatcc-tttaattttaagcagggtat 27377792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 612 - 679
Target Start/End: Original strand, 27979932 - 27979999
Alignment:
Q  612 actttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagggtatc 679  Q
    |||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||    
T  27979932 actttttcaatgcaggaattgagttatactacaatctcaaacatccttttaattttaagcagggtatc 27979999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 571 - 666
Target Start/End: Original strand, 28054936 - 28055031
Alignment:
Q  571 acaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattt 666  Q
    ||||||||||||||| ||  ||||| |||||||||| | | ||||| |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  28054936 acaaaaggcatttcccctgatttgcttgtattttttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatctttttaattt 28055031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 571 - 666
Target Start/End: Original strand, 28065361 - 28065456
Alignment:
Q  571 acaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattt 666  Q
    ||||||||||||||| ||  ||||| |||||||||| | | ||||| |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  28065361 acaaaaggcatttcccctgatttgcttgtattttttttaacactttgtcaatgcaggaattgaattatactacaatcttaaacatctttttaattt 28065456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 347 - 552
Target Start/End: Complemental strand, 1367055 - 1366856
Alignment:
Q  347 catcaaaccttttcatggaaataataatgtaatatagcagcaccacattgtgcatataaagctacagattaaaaatattaaagaaaataaattttaatgg 446  Q
    |||| |||||| | |||||||| | |||||||||||||| |||||| || |||||||||||  ||| ||||||  ||||| ||||||||||| ||| |      
T  1367055 catcgaaccttctaatggaaatgacaatgtaatatagcaacaccacgttatgcatataaagaaacaaattaaa--tattatagaaaataaatattactca 1366958  T
Q  447 aacaactacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtcagaaagacttgtagcagaatctttgtc 546  Q
     |||||||   ||  |||| |||||||||||||||||||||||| |||| ||||||||||||||||||  || ||||  || ||||||   |||||||||    
T  1366957 cacaacta---aaacatattctgcaactaatttacattttcatgctatg-aattagttggagggttcaatgttagaacaacctgtagccacatctttgtc 1366862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 451 - 524
Target Start/End: Complemental strand, 27459681 - 27459608
Alignment:
Q  451 actacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtcagaaa 524  Q
    ||||||||| |||| | |||||||||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  27459681 actacttaaaaataagttgcaactaatttacattttcatgttatgcaagcagttggagggttcaacgtcagaaa 27459608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 568 - 679
Target Start/End: Original strand, 26630753 - 26630865
Alignment:
Q  568 taaacaaaaggcatttcctctattttgcctgtatt-ttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattt 666  Q
    |||||||||||||||||| ||||||||| |||||| |||| |||  |||||| |||||||||||| ||||||| ||||| | |||  |||||| ||||||    
T  26630753 taaacaaaaggcatttcccctattttgcttgtattcttttttgactcttttttaatgcaggaattgaattatattacaaacctaagtatccttataattt 26630852  T
Q  667 taagcagggtatc 679  Q
    |||||||| ||||    
T  26630853 taagcaggttatc 26630865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 569 - 677
Target Start/End: Original strand, 27379345 - 27379453
Alignment:
Q  569 aaacaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaatttta 668  Q
    |||||||||||||||||  ||||||    ||||| | | ||| || |||||||||||| |||| |||||||||||||||||||||||||||||||| ||     
T  27379345 aaacaaaaggcatttcccttattttcttagtattctgtttgacacattttcaatgcagtaattgaattatactacaatcttaaacatccttttaatattt 27379444  T
Q  669 agcagggta 677  Q
    |||||||||    
T  27379445 agcagggta 27379453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 456 - 524
Target Start/End: Original strand, 27919615 - 27919683
Alignment:
Q  456 ttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtcagaaa 524  Q
    |||| |||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||    
T  27919615 ttaaaaatatgttgcaactaatttacattttcttgttatgcaatcagttggagggttcaacgtcagaaa 27919683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 456 - 524
Target Start/End: Original strand, 27979743 - 27979811
Alignment:
Q  456 ttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtcagaaa 524  Q
    |||| |||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||    
T  27979743 ttaaaaatatgttgcaactaatttacattttcttgttatgcaatcagttggagggttcaacgtcagaaa 27979811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 456 - 552
Target Start/End: Original strand, 28003461 - 28003557
Alignment:
Q  456 ttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtcagaaagacttgtagcagaatctttgtccaccat 552  Q
    |||| |||||| ||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||| |  |||||||  | |||||||||||||    
T  28003461 ttaaaaatatgttgcaagtaatttacattttcatgttatgcaatcagttggagggttcaacatcagaaaaaaatgtagcatcaactttgtccaccat 28003557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 456 - 524
Target Start/End: Original strand, 28036704 - 28036772
Alignment:
Q  456 ttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtcagaaa 524  Q
    |||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| | |||||||    
T  28036704 ttaaaaatatgatgcaactaatttacattttcatgttatgcaatcagttggagggttcaacatcagaaa 28036772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 556 - 676
Target Start/End: Original strand, 27348327 - 27348450
Alignment:
Q  556 agtcattgatagtaaacaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaatta----tactacaatcttaa 651  Q
    ||||||||||  |||||||||||||||||||||||||| |  |||||  |||||| |||||| |||||||| |||| |||||    |||||||| || ||    
T  27348327 agtcattgatcataaacaaaaggcatttcctctatttttctcgtattcattctgacacttttccaatgcagtaattgaattatatttactacaaactgaa 27348426  T
Q  652 acatccttttaattttaagcagggt 676  Q
    |||||| ||||||||||||||||||    
T  27348427 acatcc-tttaattttaagcagggt 27348450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 568 - 678
Target Start/End: Original strand, 28084463 - 28084574
Alignment:
Q  568 taaacaaaaggcatttcctctattttgcctgtattttttctgaaactttt-tcaatgcaggaattaaattatactacaatcttaaacatccttttaattt 666  Q
    |||||||||||||| ||| ||||||||| |||||| ||| |  |  |||| |||||||||||||| ||| ||||||||||||||| |||||||||||| |    
T  28084463 taaacaaaaggcatatcccctattttgcttgtattctttttcgagtttttctcaatgcaggaattgaatcatactacaatcttaagcatccttttaatat 28084562  T
Q  667 taagcagggtat 678  Q
    | ||||||||||    
T  28084563 ttagcagggtat 28084574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 612 - 674
Target Start/End: Original strand, 28083063 - 28083125
Alignment:
Q  612 actttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagg 674  Q
    ||||| |||||||||||||| |||||||||||||||||||||||| || ||||||||||||||    
T  28083063 actttgtcaatgcaggaattgaattatactacaatcttaaacatctttctaattttaagcagg 28083125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 613 - 674
Target Start/End: Complemental strand, 18077171 - 18077110
Alignment:
Q  613 ctttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagg 674  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  18077171 ctttttcaaagcaagaattgaattatactacaatcttaaacatcctttttattttaagcagg 18077110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 53330311 - 53330248
Alignment:
Q  177 ttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaattta 237  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||    
T  53330311 ttgtttattatcatttttagttatgtttatacattgtgcacttatactattaattttaaattta 53330248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 53333995 - 53333932
Alignment:
Q  177 ttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaattta 237  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||    
T  53333995 ttgtttattatcatttttagttatgtttatacattgtgcacttatactattaattttaaattta 53333932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 53337672 - 53337609
Alignment:
Q  177 ttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaattta 237  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||    
T  53337672 ttgtttattatcatttttagttatgtttatacattgtgcacttatactattaattttaaattta 53337609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 453 - 513
Target Start/End: Complemental strand, 26179612 - 26179552
Alignment:
Q  453 tacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttc 513  Q
    ||||||| |||||||||||||||| |||||||||||||  |||||||||||||||||||||    
T  26179612 tacttaaaaatatgctgcaactaacttacattttcatgcaatgcaattagttggagggttc 26179552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 461 - 513
Target Start/End: Complemental strand, 26236035 - 26235983
Alignment:
Q  461 aatatgctgcaactaatttacattttcatgttatgcaattagttggagggttc 513  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  26236035 aatatgctgcaactaatttacattttcatgcaatgcaattagttggagggttc 26235983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 568 - 664
Target Start/End: Original strand, 27350006 - 27350102
Alignment:
Q  568 taaacaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaat 664  Q
    ||||||||||||||||||  |||||| |  ||||| | |  || || |||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  27350006 taaacaaaaggcatttcccttattttcctagtattctgttggacacattttcaatgcagtaattgaattatactacaatcttaaacatccttttaat 27350102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 619 - 679
Target Start/End: Original strand, 28005300 - 28005360
Alignment:
Q  619 caatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagggtatc 679  Q
    ||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||||||    
T  28005300 caatgtaggaattgaattatactacaatctcaaacatccttctaattttaagcagggtatc 28005360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 598 - 674
Target Start/End: Original strand, 28161397 - 28161473
Alignment:
Q  598 gtattttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagg 674  Q
    ||||| ||| ||| ||||| || ||||||||||| | |||||||||||||||||||||| |||||||||||||||||    
T  28161397 gtattctttttgacactttgtctatgcaggaattgacttatactacaatcttaaacatctttttaattttaagcagg 28161473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 598 - 674
Target Start/End: Original strand, 28185239 - 28185315
Alignment:
Q  598 gtattttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagg 674  Q
    ||||| ||| ||| ||||| || ||||||||||| | |||||||||||||||||||||| |||||||||||||||||    
T  28185239 gtattctttttgacactttgtctatgcaggaattgacttatactacaatcttaaacatctttttaattttaagcagg 28185315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 465 - 552
Target Start/End: Original strand, 28005119 - 28005206
Alignment:
Q  465 tgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtcagaaagacttgtagcagaatctttgtccaccat 552  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||  | ||||||| | | ||||  ||| |||||||||||||    
T  28005119 tgctgcaactaatttacattttcatgctatgcaattagttggagggctctacatcagaaaaattagtaggtgaaactttgtccaccat 28005206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 26129564 - 26129502
Alignment:
Q  451 actacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttc 513  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||||| |||| ||||||||||    
T  26129564 actacttaaaaatatgctgcaactaaattacattttcatgctatgcatttagctggagggttc 26129502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 556 - 625
Target Start/End: Complemental strand, 18025230 - 18025161
Alignment:
Q  556 agtcattgatagtaaacaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgca 625  Q
    ||||||||||  ||||||||||||||||||||||||||||  ||||| | |||||||||||| |||||||    
T  18025230 agtcattgatcataaacaaaaggcatttcctctattttgctcgtattctctctgaaacttttccaatgca 18025161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 22976318 - 22976273
Alignment:
Q  164 ttaatgtgaatgtttgtttattatcatttttagttatgtttataca 209  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  22976318 ttaatatgaatgtttgtttattatcatttttagttatgtttataca 22976273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 678
Target Start/End: Original strand, 28003639 - 28003716
Alignment:
Q  601 ttttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagggtat 678  Q
    |||||| ||| |||||||||||| ||||||| |||||||| |  | ||||||||||| ||||||||||||||||||||    
T  28003639 ttttttttgacactttttcaatgtaggaattgaattataccatcaacttaaacatccatttaattttaagcagggtat 28003716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 612 - 676
Target Start/End: Complemental strand, 8539738 - 8539674
Alignment:
Q  612 actttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagggt 676  Q
    |||||| ||||||||||||| ||||||||||||||| |||||||   ||||||||||||||||||    
T  8539738 acttttccaatgcaggaattgaattatactacaatcctaaacattaatttaattttaagcagggt 8539674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 618 - 677
Target Start/End: Complemental strand, 27389252 - 27389193
Alignment:
Q  618 tcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagggta 677  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| || | |||||||    
T  27389252 tcaatgcaggaattcaattatactacaatctgaaacatccttttaatatttaacagggta 27389193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 456 - 507
Target Start/End: Original strand, 28151203 - 28151254
Alignment:
Q  456 ttaataatatgctgcaactaatttacattttcatgttatgcaattagttgga 507  Q
    |||| |||||| |||||||||||||||||||||||||||||||| |||||||    
T  28151203 ttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 28151254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 51360711 - 51360636
Alignment:
Q  134 aaatatgtaattctcacttg-----atcattttcattaatgtgaatgtttgtttattatcatttttagttatgttt 204  Q
    |||||||||||| |||||||     |||||||||||||  |||||||||||||||||||||||||| |||||||||    
T  51360711 aaatatgtaattgtcacttgactttatcattttcattagcgtgaatgtttgtttattatcattttttgttatgttt 51360636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 26128260 - 26128198
Alignment:
Q  451 actacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttc 513  Q
    ||||||| | |||||  ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  26128260 actacttgaaaatataatgcaactaatttacattttcatgctatgcaattagttagagggttc 26128198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 26178310 - 26178248
Alignment:
Q  451 actacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttc 513  Q
    ||||||| | |||||  ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  26178310 actacttgaaaatataatgcaactaatttacattttcatgctatgcaattagttagagggttc 26178248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 451 - 513
Target Start/End: Original strand, 26630609 - 26630671
Alignment:
Q  451 actacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttc 513  Q
    ||||||||| |||||  |||||||||||||||||| |||| | ||||||||||||||||||||    
T  26630609 actacttaaaaatatcatgcaactaatttacatttccatggtttgcaattagttggagggttc 26630671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 612 - 674
Target Start/End: Original strand, 28135435 - 28135497
Alignment:
Q  612 actttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagg 674  Q
    ||||| ||||||||||| || |||||||||||||||||||| ||| ||| |||||||||||||    
T  28135435 actttgtcaatgcaggagttgaattatactacaatcttaaaaatcttttaaattttaagcagg 28135497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 8539873 - 8539829
Alignment:
Q  469 gcaactaatttacattttcatgttatgcaattagttggagggttc 513  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||    
T  8539873 gcaactaatttacattttcattttatgcaatcagttggagggttc 8539829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 454 - 522
Target Start/End: Original strand, 19476134 - 19476202
Alignment:
Q  454 acttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtcaga 522  Q
    |||||| |||||| | |||||||||||||||||| || |||| |||||||||||||||||  |||||||    
T  19476134 acttaaaaatatgttacaactaatttacattttcttgctatggaattagttggagggttctacgtcaga 19476202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 627 - 674
Target Start/End: Complemental strand, 18079243 - 18079196
Alignment:
Q  627 gaattaaattatactacaatcttaaacatccttttaattttaagcagg 674  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||||    
T  18079243 gaattgaattatactacagtcttaaacatccttctaattttaagcagg 18079196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 419 - 513
Target Start/End: Complemental strand, 26202178 - 26202085
Alignment:
Q  419 aaatattaaagaaaataaattttaatggaacaactacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttc 513  Q
    |||||||||||||||||||||| | |  | | ||||||| | |||||  ||||||||||||||||||||||| |||||| | || ||||||||||    
T  26202178 aaatattaaagaaaataaattt-agttaacctactacttgaaaatataatgcaactaatttacattttcatgctatgcattcagctggagggttc 26202085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 471 - 513
Target Start/End: Original strand, 28135287 - 28135329
Alignment:
Q  471 aactaatttacattttcatgttatgcaattagttggagggttc 513  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  28135287 aactaatttacatttttatgatatgcaattagttggagggttc 28135329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 679
Target Start/End: Original strand, 26629085 - 26629182
Alignment:
Q  582 ttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagggtatc 679  Q
    |||| ||||||||| ||||||  || ||| ||||||||||||||| | || || ||||| || | || ||| |||||||||| |||||||||||||||    
T  26629085 ttcccctattttgcttgtattcgttttgacactttttcaatgcagaacttgaactatacaaccaactcaaatatccttttaaatttaagcagggtatc 26629182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 555 - 615
Target Start/End: Complemental strand, 1366832 - 1366772
Alignment:
Q  555 aagtcattgatagtaaacaaaaggcatttcctctattttgcctgtattttttctgaaactt 615  Q
    |||||||||||  ||||||||||| ||||||||| |||||| |||||| |||||| |||||    
T  1366832 aagtcattgatcataaacaaaaggtatttcctcttttttgcttgtattctttctggaactt 1366772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 677
Target Start/End: Complemental strand, 17745087 - 17745035
Alignment:
Q  625 aggaattaaattatactacaatcttaaacatccttttaattttaagcagggta 677  Q
    ||||||| ||||| ||||||||||||||||||  ||||||| |||||||||||    
T  17745087 aggaattgaattaaactacaatcttaaacatctgtttaattataagcagggta 17745035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 677
Target Start/End: Complemental strand, 19046407 - 19046355
Alignment:
Q  625 aggaattaaattatactacaatcttaaacatccttttaattttaagcagggta 677  Q
    ||||||| ||||| ||||||||||||||||||  ||||||| |||||||||||    
T  19046407 aggaattgaattaaactacaatcttaaacatctgtttaattataagcagggta 19046355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 461 - 513
Target Start/End: Complemental strand, 26140196 - 26140144
Alignment:
Q  461 aatatgctgcaactaatttacattttcatgttatgcaattagttggagggttc 513  Q
    |||||||||||||||| ||||||||||||| |||||| |||| |||| |||||    
T  26140196 aatatgctgcaactaaattacattttcatgctatgcatttagctggaaggttc 26140144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 476 - 524
Target Start/End: Original strand, 28084341 - 28084389
Alignment:
Q  476 atttacattttcatgttatgcaattagttggagggttcaccgtcagaaa 524  Q
    ||||||||||||||| ||| |||||||||||| |||||| |||||||||    
T  28084341 atttacattttcatgctatacaattagttggaaggttcaacgtcagaaa 28084389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #66
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 679
Target Start/End: Complemental strand, 26128060 - 26128009
Alignment:
Q  628 aattaaattatactacaatcttaaacatccttttaattttaagcagggtatc 679  Q
    |||| |||||| ||||||||||||||||| |||||  |||||||||||||||    
T  26128060 aattgaattatcctacaatcttaaacatcattttacatttaagcagggtatc 26128009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #67
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 679
Target Start/End: Complemental strand, 26140006 - 26139955
Alignment:
Q  628 aattaaattatactacaatcttaaacatccttttaattttaagcagggtatc 679  Q
    |||| |||||||||||||||||||||||| |||||  | |||||||||||||    
T  26140006 aatttaattatactacaatcttaaacatcgttttacatataagcagggtatc 26139955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #68
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 679
Target Start/End: Complemental strand, 26178110 - 26178059
Alignment:
Q  628 aattaaattatactacaatcttaaacatccttttaattttaagcagggtatc 679  Q
    |||| |||||| ||||||||||||||||| |||||  |||||||||||||||    
T  26178110 aattgaattatcctacaatcttaaacatcattttacatttaagcagggtatc 26178059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #69
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 489
Target Start/End: Original strand, 11420327 - 11420365
Alignment:
Q  451 actacttaataatatgctgcaactaatttacattttcat 489  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  11420327 actacttaaaaatatgttgcaactaatttacattttcat 11420365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #70
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 524
Target Start/End: Complemental strand, 19483662 - 19483608
Alignment:
Q  470 caactaatttacattttcatgttatgcaattagttggagggttcaccgtcagaaa 524  Q
    ||||| |||||||||||||||  ||||||||||||||| |||||| ||| |||||    
T  19483662 caacttatttacattttcatgacatgcaattagttggaaggttcaacgttagaaa 19483608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #71
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 22976731 - 22976693
Alignment:
Q  47 atacttctgtcttacatatttccttttaataaaagaata 85  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  22976731 atacttctgtcttacatatttccttttaaaaaaaaaata 22976693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #72
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 678
Target Start/End: Original strand, 11420520 - 11420585
Alignment:
Q  613 ctttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagggtat 678  Q
    |||||| ||||||| |||| |||||||| |  | ||||||||| | ||||||||||||||||||||    
T  11420520 cttttttaatgcagaaatttaattataccatcaacttaaacatgcatttaattttaagcagggtat 11420585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #73
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 713 - 778
Target Start/End: Original strand, 28149357 - 28149422
Alignment:
Q  713 acttctaaggaaataacaacttcacaggtgattttattttatgtaacaatgccttcaaattgacat 778  Q
    ||||||||| | | |||| |||||||||||| |||||| ||| |||||| ||||||||||| ||||    
T  28149357 acttctaagcataaaacatcttcacaggtgagtttattatatataacaaagccttcaaattaacat 28149422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #74
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 30552479 - 30552516
Alignment:
Q  158 ttttcattaatgtgaatgtttgtttattatcattttta 195  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  30552479 ttttcattaatatgaatgtttgtttattatcatgttta 30552516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 26279541 - 26279411
Alignment:
Q  132 aaaaatatgtaattctcac-----ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac--- 223  Q
    |||||||||||||| ||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
T  26279541 aaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattgtgcacttatactat 26279442  T
Q  224 taattttaaatttaattttttaataacgtat 254  Q
    |||||||||||||||||||||||||||||||    
T  26279441 taattttaaatttaattttttaataacgtat 26279411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 22204919 - 22204789
Alignment:
Q  132 aaaaatatgtaattctcac-----ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac--- 223  Q
    |||||||||||||| ||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||       
T  22204919 aaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacagtgtgcacttatactat 22204820  T
Q  224 taattttaaatttaattttttaataacgtat 254  Q
    |||||||||||||||||||||||||||||||    
T  22204819 taattttaaatttaattttttaataacgtat 22204789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 22229844 - 22229950
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||   ||||||||||||||||||||||||    
T  22229844 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacagtgtgcacttatactattaattttaaatttaattttttaat 22229943  T
Q  248 aacgtat 254  Q
    |||||||    
T  22229944 aacgtat 22229950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 25444113 - 25444232
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||   ||||||||||||||||||||||||    
T  25444113 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtccacttatactattaattttaaatttaattttttaat 25444212  T
Q  248 aacgtattgtatccgtatcg 267  Q
    ||||||| | | ||||||||    
T  25444213 aacgtatcgaagccgtatcg 25444232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 40819526 - 40819397
Alignment:
Q  132 aaaaatatgtaattctcac-----ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac--- 223  Q
    |||||||||||||| ||||     ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||       
T  40819526 aaaaatatgtaattgtcacttgttttgatca-tttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactat 40819428  T
Q  224 taattttaaatttaattttttaataacgtat 254  Q
    |||||||||||||||||||||||||||||||    
T  40819427 taattttaaatttaattttttaataacgtat 40819397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 22293350 - 22293455
Alignment:
Q  152 tgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaata 248  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||    
T  22293350 tgatcattttcattaacttgaatgtttatttattatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaata 22293449  T
Q  249 acgtat 254  Q
    ||||||    
T  22293450 acgtat 22293455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 45281320 - 45281428
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||   ||||||||||||||||||||||||    
T  45281320 ttgatcattttcattaatgtgaatgttagtttattatcatttttaattatgtttatacactatgcacttatactattaattttaaatttaattttttaat 45281419  T
Q  248 aacgtattg 256  Q
    ||| |||||    
T  45281420 aacatattg 45281428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 30948065 - 30948159
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaatttt 242  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||    
T  30948065 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaatttt 30948159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 132 - 267
Target Start/End: Complemental strand, 19927850 - 19927708
Alignment:
Q  132 aaaaatatgtaattctcac-----ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac--- 223  Q
    |||||||||||||| ||||     ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||       
T  19927850 aaaaatatgtaattgtcacttgttttgatca-tttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtacacttatactat 19927752  T
Q  224 taattttaaatttaattttttaataacgtattgtatccgtatcg 267  Q
    ||||||||||||||||||||||| ||||||| |  |||||||||    
T  19927751 taattttaaatttaattttttaaaaacgtatcgagtccgtatcg 19927708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 15042833 - 15042727
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    ||||||||||||||| | || ||||||||||||||||||||||||||||||| |||||||| |||||||||||   || ||||||||||||||||| |||    
T  15042833 ttgatcattttcatttacgtaaatgtttgtttattatcatttttagttatgtctatacattgtgcacttatactattagttttaaatttaatttttgaat 15042734  T
Q  248 aacgtat 254  Q
    |||||||    
T  15042733 aacgtat 15042727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 618 - 674
Target Start/End: Complemental strand, 8692698 - 8692642
Alignment:
Q  618 tcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagg 674  Q
    |||||| | ||||| ||||||||| |||||||||||||| |||||||||||| ||||    
T  8692698 tcaatgaaagaattgaattatactgcaatcttaaacatctttttaattttaatcagg 8692642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 15043226 - 15043192
Alignment:
Q  46 gatacttctgtcttacatatttccttttaataaaa 80  Q
    |||||||||||||||||||||||||||||| ||||    
T  15043226 gatacttctgtcttacatatttccttttaaaaaaa 15043192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 22205297 - 22205248
Alignment:
Q  23 cggctaatttatatttcgcaacggatacttctgtcttacatatttccttt 72  Q
    ||||||| ||||| ||||  || |||||||||||||||||||||||||||    
T  22205297 cggctaacttatacttcgacaccgatacttctgtcttacatatttccttt 22205248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 22229442 - 22229491
Alignment:
Q  23 cggctaatttatatttcgcaacggatacttctgtcttacatatttccttt 72  Q
    ||||||| ||||| ||||  || |||||||||||||||||||||||||||    
T  22229442 cggctaacttatacttcgacaccgatacttctgtcttacatatttccttt 22229491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 3e-41; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 17630756 - 17630624
Alignment:
Q  132 aaaaatatgtaattctcac-----ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac--- 223  Q
    |||||||||||||| ||||     |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||       
T  17630756 aaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactat 17630657  T
Q  224 taattttaaatttaattttttaataacgtattg 256  Q
    |||||||||||||||||||||||||||||||||    
T  17630656 taattttaaatttaattttttaataacgtattg 17630624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 10861379 - 10861273
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||    
T  10861379 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaat 10861280  T
Q  248 aacgtat 254  Q
    |||||||    
T  10861279 aacgtat 10861273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 17068681 - 17068787
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||    
T  17068681 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaat 17068780  T
Q  248 aacgtat 254  Q
    |||||||    
T  17068781 aacgtat 17068787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 17579616 - 17579486
Alignment:
Q  132 aaaaatatgtaattctcac-----ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac--- 223  Q
    |||||||||||||| ||||     |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||       
T  17579616 aaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactat 17579517  T
Q  224 taattttaaatttaattttttaataacgtat 254  Q
    |||||||||||||||||||||||||||||||    
T  17579516 taattttaaatttaattttttaataacgtat 17579486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 20289845 - 20289951
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||    
T  20289845 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaat 20289944  T
Q  248 aacgtat 254  Q
    |||||||    
T  20289945 aacgtat 20289951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 21076475 - 21076581
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||    
T  21076475 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaat 21076574  T
Q  248 aacgtat 254  Q
    |||||||    
T  21076575 aacgtat 21076581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 29055071 - 29055177
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||    
T  29055071 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattatgcacttatactattaattttaaatttaattttttaat 29055170  T
Q  248 aacgtat 254  Q
    |||||||    
T  29055171 aacgtat 29055177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 34964342 - 34964212
Alignment:
Q  132 aaaaatatgtaattctcac-----ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac--- 223  Q
    |||||||||||||| ||||     |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||       
T  34964342 aaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactat 34964243  T
Q  224 taattttaaatttaattttttaataacgtat 254  Q
    |||||||||||||||| ||||||||||||||    
T  34964242 taattttaaatttaatattttaataacgtat 34964212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 44718169 - 44718039
Alignment:
Q  132 aaaaatatgtaattctcacttg-----atcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatactaa 226  Q
    |||||||||||||| |||||||     |||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  44718169 aaaaatatgtaattgtcacttgttctgatcatttttatttatgtaaatgtttgtttattatcatttttagttatgtttatacattgtacacttatactaa 44718070  T
Q  227 ---ttttaaatttaattttttaataacgtat 254  Q
       ||||||||||||| ||||||||||||||    
T  44718069 tagttttaaatttaatcttttaataacgtat 44718039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 3046365 - 3046238
Alignment:
Q  132 aaaaatatgtaattctcac-----ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac--- 223  Q
    |||||||||||||| ||||     ||||||||||||||||||||||| |||| ||||||||||||||||||||   ||||||||| |||||||||||       
T  3046365 aaaaatatgtaattatcacttgttttgatcattttcattaatgtgaacgtttttttattatcatttttagtta---ttatacattgtgcacttatactat 3046269  T
Q  224 taattttaaatttaattttttaataacgtat 254  Q
    |||||||||||||||||||||||||||||||    
T  3046268 taattttaaatttaattttttaataacgtat 3046238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 37645 - 37515
Alignment:
Q  132 aaaaatatgtaattctcac-----ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac--- 223  Q
    |||||||||||||| ||||     |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||       
T  37645 aaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactat 37546  T
Q  224 taattttaaatttaattttttaataacgtat 254  Q
    |||||||||||||||||||||||||||||||    
T  37545 taattttaaatttaattttttaataacgtat 37515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 4e-40; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 6666202 - 6666308
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||| ||||||||||||||||||||    
T  6666202 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacactctgcacttatactattaagtttaaatttaattttttaat 6666301  T
Q  248 aacgtat 254  Q
    |||||||    
T  6666302 aacgtat 6666308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 8871750 - 8871856
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||    
T  8871750 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactattaattttaaatttaattttttaat 8871849  T
Q  248 aacgtat 254  Q
    |||||||    
T  8871850 aacgtat 8871856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 13854289 - 13854159
Alignment:
Q  132 aaaaatatgtaattctcac-----ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac--- 223  Q
    |||||||||||||| ||||     |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||       
T  13854289 aaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatctttatacattgtgcacttatactat 13854190  T
Q  224 taattttaaatttaattttttaataacgtat 254  Q
    |||||||||||||||||||||||||||||||    
T  13854189 taattttaaatttaattttttaataacgtat 13854159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 36606647 - 36606753
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||   ||||||||||||||||||||||||    
T  36606647 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgggcacttatactattaattttaaatttaattttttaat 36606746  T
Q  248 aacgtat 254  Q
    |||||||    
T  36606747 aacgtat 36606753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 32659427 - 32659539
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    ||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| |   || ||||||   ||||||||||||||||||||||||    
T  32659427 ttgattatttttattaatgtgaaagtttgtttaatatcatttttagttatgtttatacactacacatttatactgttaattttaaatttaattttttaat 32659526  T
Q  248 aacgtattgtatc 260  Q
    || |||| |||||    
T  32659527 aatgtatcgtatc 32659539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 28063854 - 28063917
Alignment:
Q  183 attatcatttttagttatgtttatacattctgcact--tatactaattttaaatttaatttttt 244  Q
    ||||||||||||||||||||||||| ||| |||| |  |||||| | |||||||||||||||||    
T  28063854 attatcatttttagttatgtttatatattgtgcatttatatacttaatttaaatttaatttttt 28063917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 14313981 - 14313851
Alignment:
Q  132 aaaaatatgtaattctcac-----ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac--- 223  Q
    |||||||||||||| ||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
T  14313981 aaaaatatgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattgtgcacttatactat 14313882  T
Q  224 taattttaaatttaattttttaataacgtat 254  Q
    ||||| |||||||||||||||||||||||||    
T  14313881 taattctaaatttaattttttaataacgtat 14313851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 14811782 - 14811888
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||   ||| |||||||||| |||||||||    
T  14811782 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatactattaactttaaatttatttttttaat 14811881  T
Q  248 aacgtat 254  Q
    |||||||    
T  14811882 aacgtat 14811888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 13043395 - 13043294
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatacta---attttaaatttaattttttaat 247  Q
    |||||||||||||||||||||    |||||||||||||||||||| |||| |||||||||| |||| ||||||||   ||||||||||||||||||||||    
T  13043395 ttgatcattttcattaatgtg----tttgtttattatcatttttaattatatttatacattgtgca-ttatactattaattttaaatttaattttttaat 13043301  T
Q  248 aacgtat 254  Q
    |||||||    
T  13043300 aacgtat 13043294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 447 - 534
Target Start/End: Original strand, 22392460 - 22392547
Alignment:
Q  447 aacaactacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtcagaaagacttgtagc 534  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||| || ||||||    
T  22392460 aacaactacttaaaaatattctgcaactaatttacattttcatgctacgcaatcagttggagggttcaacgtcagaaaaacctgtagc 22392547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 551 - 676
Target Start/End: Original strand, 22392591 - 22392719
Alignment:
Q  551 atacaagtcattgatagtaaacaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaat----tatactacaat 646  Q
    |||||||||||||||  |||||||||||||||||||||||||| | ||||||  |||||| |||||| |||||||||||||  ||    ||||||||||     
T  22392591 atacaagtcattgatcataaacaaaaggcatttcctctatttttcttgtattcattctgacacttttccaatgcaggaattgtattatatatactacaaa 22392690  T
Q  647 cttaaacatccttttaattttaagcagggt 676  Q
    || |||||||| ||||| ||||||||||||    
T  22392691 ctgaaacatcc-tttaagtttaagcagggt 22392719  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 568 - 677
Target Start/End: Original strand, 22394322 - 22394431
Alignment:
Q  568 taaacaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaatttt 667  Q
    ||||||||||||||||||  |||||| |  ||||| | |  || || |||||||||||| |||| ||||||||||||||||||||||| |||||||| ||    
T  22394322 taaacaaaaggcatttcccttattttcctagtattctgttggacacattttcaatgcagtaattgaattatactacaatcttaaacatgcttttaatgtt 22394421  T
Q  668 aagcagggta 677  Q
     |||||||||    
T  22394422 tagcagggta 22394431  T

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Target: chr6 (Bit Score: 81; Significance: 1e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 21112602 - 21112708
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||   ||||||||||||||||||||||||    
T  21112602 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgtacttatactattaattttaaatttaattttttaat 21112701  T
Q  248 aacgtat 254  Q
    |||||||    
T  21112702 aacgtat 21112708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 1413972 - 1413862
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcactta---tactaattttaaa--tttaatttttta 245  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||   || ||||||||||  ||||||||||||    
T  1413972 ttgatcattttcattagtgtgaatgtttgtttattatcatttttagttatgtttatacattgtgcacttatattattaattttaaaattttaatttttta 1413873  T
Q  246 ataacgtattg 256  Q
    |||||||||||    
T  1413872 ataacgtattg 1413862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 8862537 - 8862642
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatacta---attttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||   ||||||||||||| ||||||||    
T  8862537 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatatttatacattgtgcacttatactattcattttaaatttaa-tttttaat 8862635  T
Q  248 aacgtat 254  Q
    |||||||    
T  8862636 aacgtat 8862642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 9149801 - 9149671
Alignment:
Q  132 aaaaatatgtaattctcac-----ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac--- 223  Q
    |||||||||||||| ||||     |||||||||||||||||  |||||||||||||||||||||| ||  |||| | |||||||| ||||| |||||       
T  9149801 aaaaatatgtaattgtcacttgttttgatcattttcattaacctgaatgtttgtttattatcattattcattatatgtatacattgtgcacgtatactgt 9149702  T
Q  224 taattttaaatttaattttttaataacgtat 254  Q
    || ||||||||||||||||||||||| ||||    
T  9149701 tagttttaaatttaattttttaataatgtat 9149671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 34752401 - 34752507
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||||||||| ||| ||| |  |||| |||||   ||||||||||| |||| |||||||    
T  34752401 ttgatcatttttattaatgttaatgtttatttattatcatttttagttatgattacacactgggcacatatactattaattttaaatataatcttttaat 34752500  T
Q  248 aacgtat 254  Q
    |||||||    
T  34752501 aacgtat 34752507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 3365966 - 3366074
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | |||||||||||   ||||||||||||||| ||||||||    
T  3365966 ttgatcattttcattaatgtgaatgtttatttattatcatttttagctatgtttatacactgtgcacttatactattaattttaaatttaactttttaat 3366065  T
Q  248 aacgtattg 256  Q
    |||||||||    
T  3366066 aacgtattg 3366074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 22150251 - 22150136
Alignment:
Q  155 tcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaataacg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||   || ||||||||||||||||||||||| |    
T  22150251 tcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatatattgtgcatttatactattatttttaaatttaattttttaataatg 22150152  T
Q  252 tattgtatccgtatcg 267  Q
    ||| |  |||||||||    
T  22150151 tatcgagtccgtatcg 22150136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 1608577 - 1608509
Alignment:
Q  189 atttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaataacgtat 254  Q
    ||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||    
T  1608577 atttttagttatgtttatacattttgcacttatactattaattttaaatttaattttttaataacgtat 1608509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 23205757 - 23205698
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacat 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  23205757 ttgatcattttcattaatgtgaatgttagtttattatcatttttaattatgtttacacat 23205698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 22150648 - 22150619
Alignment:
Q  46 gatacttctgtcttacatatttccttttaa 75  Q
    ||||||||||||||||||||||||||||||    
T  22150648 gatacttctgtcttacatatttccttttaa 22150619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 26261686 - 26261793
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taatttt-aaatttaattttttaa 246  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||   ||||||| ||||||||||||||||    
T  26261686 ttgatcattttcatttatgtgaatgtttgtttattatcattttaagttatgtttatacattgtgcacttatactgttaattttaaaatttaattttttaa 26261785  T
Q  247 taacgtat 254  Q
    ||||||||    
T  26261786 taacgtat 26261793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 32761035 - 32761141
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatac---taattttaaatttaattttttaat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||   || ||||||||||||||||||||     
T  32761035 ttgatcattttcattaatgtgaatgtttgtttattatcatttttaattatgttcatatattgtgcacttatactattagttttaaatttaattttttaag 32761134  T
Q  248 aacgtat 254  Q
    |||||||    
T  32761135 aacgtat 32761141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 54260621 - 54260695
Alignment:
Q  151 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattctgcacttatacta 225  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  54260621 ttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttatacta 54260695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 51161612 - 51161683
Alignment:
Q  183 attatcatttttagttatgtttatacattctgcactta---tactaattttaaatttaatttt-ttaataac 250  Q
    ||||||||||||||||||||||||| ||| ||||||||   || || |||||||||||||||| ||||||||    
T  51161612 attatcatttttagttatgtttatatattgtgcacttatattattagttttaaatttaattttcttaataac 51161683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 26261157 - 26261193
Alignment:
Q  49 acttctgtcttacatatttccttttaataaaagaata 85  Q
    ||||||||||||||||||||||||||| |||||||||    
T  26261157 acttctgtcttacatatttccttttaaaaaaagaata 26261193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 428 - 524
Target Start/End: Original strand, 1304 - 1400
Alignment:
Q  428 agaaaataaattttaatggaacaactacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtcagaaa 524  Q
    ||||||||||||||| |  ||| ||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| | |||||||    
T  1304 agaaaataaattttactttaactactacttaaaaatatgctgcaactaatttacatttttatggtatgcaattagttggagggctcagcatcagaaa 1400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 677
Target Start/End: Original strand, 1518 - 1580
Alignment:
Q  615 ttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagggta 677  Q
    ||||||||||||||||| || |||||||||||||||||||| |||||| | || |||||||||    
T  1518 ttttcaatgcaggaattgaaatatactacaatcttaaacattcttttattgtttagcagggta 1580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 56; Significance: 9e-23; HSPs: 4)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 448 - 551
Target Start/End: Complemental strand, 53950 - 53847
Alignment:
Q  448 acaactacttaataatatgctgcaactaatttacattttcatgttatgcaattagttggagggttcaccgtcagaaagacttgtagcagaatctttgtcc 547  Q
    |||||||||||| |||||  ||||||||||||||||||||||| ||||| || |||||||||||||| || |||||| || |||||| |||||||||||     
T  53950 acaactacttaaaaatattgtgcaactaatttacattttcatgctatgctatcagttggagggttcaacgccagaaaaacctgtagcggaatctttgtct 53851  T
Q  548 acca 551  Q
    ||||    
T  53850 acca 53847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 551 - 676
Target Start/End: Complemental strand, 53820 - 53692
Alignment:
Q  551 atacaagtcattgatagtaaacaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcaggaattaaat----tatactacaat 646  Q
    |||||||||||||||  |||||||||||||||| |||||||||||   ||||  |||| | |||||| ||||||||||||| |||    ||||||||||     
T  53820 atacaagtcattgatcataaacaaaaggcattttctctattttgctcatattcattcttatacttttacaatgcaggaattgaattatatatactacaaa 53721  T
Q  647 cttaaacatccttttaattttaagcagggt 676  Q
    || |||||||| ||||||||||||||||||    
T  53720 ctgaaacatcc-tttaattttaagcagggt 53692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 615 - 677
Target Start/End: Complemental strand, 52037 - 51975
Alignment:
Q  615 ttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattttaagcagggta 677  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||| || |||||||||    
T  52037 ttttcaatgcagtaattgaattatactacaatcttaaacatccttttaatatttagcagggta 51975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 321 - 406
Target Start/End: Complemental strand, 54097 - 54012
Alignment:
Q  321 catttacaaggagaaattgatgccagcatcaaaccttttcatggaaataataatgtaatatagcagcaccacattgtgcatataaa 406  Q
    |||||||| |||||||||||| |   ||||||||||| |||||||||| | ||||||||| || ||||||||||||||||||||||    
T  54097 catttacatggagaaattgatacgtccatcaaaccttctcatggaaatgacaatgtaatacagaagcaccacattgtgcatataaa 54012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 674
Target Start/End: Original strand, 18593 - 18700
Alignment:
Q  568 taaacaaaaggcatttcc-tctattttgcctgtattttttctgaaactttttcaatgcaggaattaaattatactacaatcttaaacatccttttaattt 666  Q
    |||||||||||||||||| ||  ||||||  | ||| ||| ||| ||||| |||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  18593 taaacaaaaggcatttccctcatttttgctagcattctttttgacactttgtcaatgcaggaattgaattatactacaatcttaaacatcttttcaattt 18692  T
Q  667 taagcagg 674  Q
    ||||||||    
T  18693 taagcagg 18700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 713 - 771
Target Start/End: Original strand, 18748 - 18806
Alignment:
Q  713 acttctaaggaaataacaacttcacaggtgattttattttatgtaacaatgccttcaaa 771  Q
    ||||||||||| | |||| |||||||||||| | |||||||| |||||| |||||||||    
T  18748 acttctaaggagaaaacatcttcacaggtgagtatattttatttaacaaagccttcaaa 18806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 637 - 677
Target Start/End: Original strand, 1 - 41
Alignment:
Q  637 atactacaatcttaaacatccttttaattttaagcagggta 677  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  1 atactacaatcttaaacatccttttaatatttagcagggta 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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