View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1898_low_10 (Length: 346)

Name: NF1898_low_10
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1898_low_10
NF1898_low_10
[»] chr8 (4 HSPs)
chr8 (1-336)||(21604492-21604827)
chr8 (73-324)||(21609550-21609805)
chr8 (1-257)||(21607111-21607369)
chr8 (1-104)||(21634610-21634713)
[»] chr3 (13 HSPs)
chr3 (1-336)||(38028504-38028839)
chr3 (1-324)||(38039832-38040154)
chr3 (1-300)||(38036567-38036866)
chr3 (1-289)||(50910027-50910313)
chr3 (1-155)||(38033694-38033852)
chr3 (1-257)||(38031142-38031400)
chr3 (186-336)||(38033538-38033688)
chr3 (1-192)||(38024755-38024948)
chr3 (1-176)||(55084853-55085028)
chr3 (1-120)||(38043970-38044089)
chr3 (1-125)||(50904741-50904865)
chr3 (1-125)||(48840661-48840784)
chr3 (1-98)||(50911845-50911942)
[»] chr4 (32 HSPs)
chr4 (1-122)||(17970366-17970487)
chr4 (11-104)||(27444764-27444857)
chr4 (1-131)||(27514958-27515088)
chr4 (1-84)||(27503989-27504072)
chr4 (1-131)||(27468270-27468400)
chr4 (1-127)||(27475526-27475652)
chr4 (8-104)||(27431118-27431214)
chr4 (1-84)||(27415688-27415771)
chr4 (1-84)||(27524591-27524674)
chr4 (12-83)||(27563337-27563408)
chr4 (1-82)||(27570041-27570122)
chr4 (1-145)||(27412731-27412875)
chr4 (8-124)||(27423296-27423412)
chr4 (8-108)||(27523369-27523469)
chr4 (12-83)||(27585766-27585837)
chr4 (7-125)||(27420481-27420599)
chr4 (8-69)||(27490034-27490095)
chr4 (8-108)||(27516575-27516675)
chr4 (2-108)||(27479969-27480075)
chr4 (8-108)||(27505668-27505768)
chr4 (16-104)||(27554391-27554479)
chr4 (8-123)||(27497273-27497388)
chr4 (6-69)||(27498487-27498550)
chr4 (32-90)||(27500322-27500380)
chr4 (26-104)||(27507783-27507861)
chr4 (16-90)||(27557571-27557645)
chr4 (23-108)||(27460567-27460652)
chr4 (23-108)||(27476776-27476861)
chr4 (1-54)||(27502827-27502880)
chr4 (8-108)||(27487057-27487157)
chr4 (26-90)||(27559224-27559288)
chr4 (26-90)||(27567347-27567411)
[»] chr2 (1 HSPs)
chr2 (1-122)||(3073636-3073757)
[»] chr5 (2 HSPs)
chr5 (7-123)||(1754761-1754877)
chr5 (1-126)||(1756705-1756830)


Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 21604827 - 21604492
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  21604827 tcaaaacatgttgagtcaagacgaggaagaattaggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattact 21604728  T
Q  101 tctcacttcaatgggctataaatcttacactaaaggagactgacacagattagcaagaaaattttgtataatagtcatcatttagatttgtatagatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21604727 tctcacttcaatgggctataaatcttacactaaaggagactgacatagattagcaagaaaattttgtacaatagtcatcatttagatttgtatagatttt 21604628  T
Q  201 gtttcannnnnnnacctttggaatgggttagaattatccatctaaatgacaaattcattaagaaccaaattatttgttattatttatttataatcataat 300  Q
    ||||||       ||||||||||||||||| |||| ||||| ||||||||||||| ||| || |||||||||| ||||||||||||||| ||||||||||    
T  21604627 gtttcatttttctacctttggaatgggttataattgtccatttaaatgacaaatttattcaggaccaaattatctgttattatttatttctaatcataat 21604528  T
Q  301 gacagaatgcattcaataactcaatcagctcctatg 336  Q
     |||||||||||||||||||||||| ||||||||||    
T  21604527 aacagaatgcattcaataactcaattagctcctatg 21604492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 73 - 324
Target Start/End: Complemental strand, 21609805 - 21609550
Alignment:
Q  73 cacagaagatgttttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactgacacagattagcaagaaaattttgtataat 172  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  21609805 cacagaagacattttcttgcatattacttctcacttcaatgggctataaatcttacactaaaggagactgacatagattagcaagaaaattttgtacaat 21609706  T
Q  173 agtcatcatt----tagatttgtatagattttgtttcannnnnnnacctttggaatgggttagaattatccatctaaatgacaaattcattaagaaccaa 268  Q
    ||||||||||    |||||||||| |||||||||||||       ||||| ||||||| |||||||| |||| || |||| |||||||||| || | |||    
T  21609705 agtcatcatttagctagatttgtaaagattttgtttcattttcctaccttaggaatggtttagaattgtccacctgaatggcaaattcattcaggaacaa 21609606  T
Q  269 attatttgttattatttatttataatcataatgacagaatgcattcaataactcaa 324  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||| |||||||    
T  21609605 attatttgttattatttatttctaatcataatgacaaaaggcattcaacaactcaa 21609550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 21607369 - 21607111
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    ||||||||| ||||||||||| ||||||||||| |||||||| || |||||||| ||||||||  |||| |||||||||||| ||||| || | ||||||    
T  21607369 tcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacggttccttgcacagaagatattttcatggaaattact 21607270  T
Q  101 tctcacttcaatgggctataaatcttacactaaaggagactgacacagattagcaagaaaattttgtata--atagtcatcatttagatttgtatagatt 198  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||||||| || | | ||||||||  |||||||| ||||||||||||| |||||    
T  21607269 tctcgcttcaatgggctataaatcttacactaaagaagactgacatagattagctaggacactttgtatattatagtcatgatttagatttgtaaagatt 21607170  T
Q  199 ttgtttcannnnnnnacctttggaatgggttagaattatccatctaaatgacaaattca 257  Q
    || ||||        |||||||||||||||||| ||| ||||||| |||||||||||||    
T  21607169 ttttttccttttcatacctttggaatgggttagcattgtccatctgaatgacaaattca 21607111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 21634610 - 21634713
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||| ||||| |||||||||| ||||||||||| |||||||| |||| |||||||||| |||||||||| ||||| |||||||||||||||| | |||||    
T  21634610 tcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaagatgttttcttgcgtgttact 21634709  T
Q  101 tctc 104  Q
    ||||    
T  21634710 tctc 21634713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 38028839 - 38028504
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  38028839 tcaaaacctgttgagtcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattact 38028740  T
Q  101 tctcacttcaatgggctataaatcttacactaaaggagactgacacagattagcaagaaaattttgtataatagtcatcatttagatttgtatagatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  38028739 tctcacttcaatgggctataaatcttacactaaaggagactgacatagattagcaagaaaattttgtacaatagtcatcatttagatttgtttagatttt 38028640  T
Q  201 gtttcannnnnnnacctttggaatgggttagaattatccatctaaatgacaaattcattaagaaccaaattatttgttattatttatttataatcataat 300  Q
    ||||||       ||||||||||||||||| |||| ||||| ||||||||||||| ||| || |||||||||| ||||||||||||||| ||||||||||    
T  38028639 gtttcatttttctacctttggaatgggttataattgtccatttaaatgacaaatttattcaggaccaaattatctgttattatttatttctaatcataat 38028540  T
Q  301 gacagaatgcattcaataactcaatcagctcctatg 336  Q
     |||||||||||||||||||||||| ||||||||||    
T  38028539 aacagaatgcattcaataactcaattagctcctatg 38028504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 38040154 - 38039832
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  38040154 tcaaaacctgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattact 38040055  T
Q  101 tctcacttcaatgggctataaatcttacactaaaggagactgacacagattagcaagaaaattttgtataatagtcatcatttagatttgtatagatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  38040054 tctcacttcaatgggctataaatcttacactaaaggagactgacatagattagcaagaaaattttgtacaatagtcatcatttaga-ttgtaaagatttt 38039956  T
Q  201 gtttcannnnnnnacctttggaatgggttagaattatccatctaaatgacaaattcattaagaaccaaattatttgttattatttatttataatcataat 300  Q
    ||||||       || || ||||||| |||||||| ||||||| ||||  ||||||||| || | |||||||||||||||||||||||| ||||||||||    
T  38039955 gtttcattttcctactttaggaatggtttagaattgtccatctgaatggaaaattcattcaggaacaaattatttgttattatttatttctaatcataat 38039856  T
Q  301 gacagaatgcattcaataactcaa 324  Q
    |||| || |||||||| |||||||    
T  38039855 gacaaaaggcattcaacaactcaa 38039832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 38036866 - 38036567
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  38036866 tcaaaatttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaatacgttttcttgcatattact 38036767  T
Q  101 tctcacttcaatgggctataaatcttacactaaaggagactgacacagattagcaagaaaattttgtataatagtcatcatttagatttgtatagatttt 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| |||||| |||  ||||||||||| |||||||    
T  38036766 tctcacttcaatgggctataaatcttacactataggagactgacatagattagaaagaaaattttgtacaatagtgatcgcttagatttgtaaagatttt 38036667  T
Q  201 gtttcannnnnnnacctttggaatgggttagaattatccatctaaatgacaaattcattaagaaccaaattatttgttattatttatttataatcataat 300  Q
     |||||       |||||||||||| ||||||||| ||||||| ||||||||||||||| || | ||||||||||||||| ||||  || ||||||||||    
T  38036666 atttcattttcctacctttggaatgtgttagaattgtccatctgaatgacaaattcattcaggaacaaattatttgttataatttcattctaatcataat 38036567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 50910027 - 50910313
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||||||||||||| |||||  ||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||    
T  50910027 tcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgtcttcttgcaaattact 50910126  T
Q  101 tctcacttcaatgggctataaatcttacactaaaggagactgacacagattagcaagaaaattttgtataatagtcatcatttaga-tttgtatagattt 199  Q
    |||| |||||||| |||||||||||| || ||||||||||||||| ||||||||| | |||||||||| ||||||||| ||||| | |||||| ||||||    
T  50910127 tctcgcttcaatgagctataaatctttcaataaaggagactgacatagattagcagggaaattttgtacaatagtcatgatttatattttgtaaagattt 50910226  T
Q  200 tgtttcannnnnnnacctttggaatgggttagaattatccatctaaatgacaaattcattaagaaccaaattatttgttattatttattt 289  Q
    |||||||       |||| ||||||||   |||||| ||||||| ||||||||||||||| || | ||||||||||||||||||||||||    
T  50910227 tgtttcattttcctacctctggaatgg---agaattgtccatctgaatgacaaattcattcaggaacaaattatttgttattatttattt 50910313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 38033852 - 38033694
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaat----gggcggcctcacaattccctgcacagaagatgttttcttgcatat 96  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    ||||||| |||||||||||||||||||||||||||||||||||||    
T  38033852 tcaaaacttgttgagtcaagccgaggaagaatttggatatgaccatccaattaatgggcggcatcacaattccctgcacagaagatgttttcttgcatat 38033753  T
Q  97 tacttctcacttcaatgggctataaatcttacactaaaggagactgacacagattagca 155  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38033752 tacttctcgcttcaatgggctataaatcttacactaaaggagactgacatagattagca 38033694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 38031400 - 38031142
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    ||||||||| ||||||||||| ||||||||||| |||||||| || |||||||| |||||||| ||||| |||||||||||  ||||| || | ||||||    
T  38031400 tcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattact 38031301  T
Q  101 tctcacttcaatgggctataaatcttacactaaaggagactgacacagattagcaagaaaattttgtata--atagtcatcatttagatttgtatagatt 198  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||||||| || | | ||||||||  |||||||| ||||||||||||| |||||    
T  38031300 tctcgcttcaatgggctataaatcttacactaaagaagactgacatagattagctaggacactttgtatattatagtcatgatttagatttgtaaagatt 38031201  T
Q  199 ttgtttcannnnnnnacctttggaatgggttagaattatccatctaaatgacaaattca 257  Q
    || ||||        |||||||||||||||||| ||| ||||||| |||||||||||||    
T  38031200 ttttttccttttcatacctttggaatgggttagcattgtccatctgaatgacaaattca 38031142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 186 - 336
Target Start/End: Complemental strand, 38033688 - 38033538
Alignment:
Q  186 atttgtatagattttgtttcannnnnnnacctttggaatgggttagaattatccatctaaatgacaaattcattaagaaccaaattatttgttattattt 285  Q
    |||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38033688 atttttatagattttgtttcatttttctacctttggaatgggttagaattatccatctaaatgacaaattcattcagaaccaaattatttgttattattt 38033589  T
Q  286 atttataatcataatgacagaatgcattcaataactcaatcagctcctatg 336  Q
    |||| |||| ||||||||||||| |||||||||||||||||||||||||||    
T  38033588 atttctaataataatgacagaatccattcaataactcaatcagctcctatg 38033538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 38024948 - 38024755
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    ||||||||| ||||||||||| ||||||||||| |||||||| || |||||||| |||||||| ||||| |||||||||||  ||||| || | ||||||    
T  38024948 tcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattact 38024849  T
Q  101 tctcacttcaatgggctataaatcttacactaaaggagactgacacagattagcaagaaaattttgtata--atagtcatcatttagatttgta 192  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||||||| || | | ||||||||  |||||||| |||||||||||||    
T  38024848 tctcgcttcaatgggctataaatcttacactaaagaagactgacatagattagctaggacactttgtatactatagtcatgatttagatttgta 38024755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 55084853 - 55085028
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||| ||||||||||||  || ||||||||||| ||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||    
T  55084853 tcaagacttgttgagtcgggcggaggaagaatttggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctttcatattact 55084952  T
Q  101 tctcacttcaatgggctataaatcttacactaaaggagactgacacagattagcaagaaaattttgtataatagtc 176  Q
    |||| ||||||||  |||||||||||||||| || |||| ||||| |||||||| || | |||||||| |||||||    
T  55084953 tctcgcttcaatgaactataaatcttacactgaaagagattgacatagattagctaggacattttgtacaatagtc 55085028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 38043970 - 38044089
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||| ||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||| ||||||||||| | |||||    
T  38043970 tcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcggcctcacaattccttgcaccgaaggtgttttcttgcgtgttact 38044069  T
Q  101 tctcacttcaatgggctata 120  Q
    |||| |||||||||| ||||    
T  38044070 tctcgcttcaatgggatata 38044089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 50904865 - 50904741
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||| |||||||||||| ||| ||||| |||||||||||||| ||||||||||| |||||||| ||||| |||| |||||| ||||| |||||||| |||    
T  50904865 tcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgcagagaagaggtttttttgcatatcact 50904766  T
Q  101 tctcacttcaatgggctataaatct 125  Q
    |||| |||||||||||| |||||||    
T  50904765 tctcgcttcaatgggctgtaaatct 50904741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 48840784 - 48840661
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||| ||||||||||| |||  ||| ||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  48840784 tcaagacttgttgagt-aagtggagaaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgttttcttgcacattact 48840686  T
Q  101 tctcacttcaatgggctataaatct 125  Q
      |  ||||||||||||||||||||    
T  48840685 gttagcttcaatgggctataaatct 48840661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 50911942 - 50911845
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatatta 98  Q
    ||||||||||||||||||||| ||||||||||| |||||||| || |||||||| ||||| |||||||| |||||||||| |||||||||||| ||||    
T  50911942 tcaaaacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacagaaggtgttttcttgcacatta 50911845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 17970366 - 17970487
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||| ||||| ||||||  || ||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||||    
T  17970366 tcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgtttttttgcatgttact 17970465  T
Q  101 tctcacttcaatgggctataaa 122  Q
    |||  ||||||||| |||||||    
T  17970466 tctagcttcaatggtctataaa 17970487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 27444857 - 27444764
Alignment:
Q  11 ttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctc 104  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| || ||||||||||| |||| |||||| ||||||||  ||||||||||||    
T  27444857 ttgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 27444764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 27514958 - 27515088
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||| |||||||||||||| ||||||||||||| |||||||| ||||| ||||| |||||||| ||||| || ||||||||||| |||  |||||| | |    
T  27514958 tcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgtacagaagatgtcttccagcatataatt 27515057  T
Q  101 tctcacttcaatgggctataaatcttacact 131  Q
    |||  ||| ||||| |||| |||||||||||    
T  27515058 tcttccttgaatggactatgaatcttacact 27515088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27503989 - 27504072
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgt 84  Q
    |||| ||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||| ||||| ||||| ||||||||    
T  27503989 tcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcaccgaagatgt 27504072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 27468400 - 27468270
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||| |||||||||||||| ||||||||||||| |||||||| ||||| ||||| |||||||| ||||| ||||| |||||||| |||   ||||| | |    
T  27468400 tcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgcacggaagatgtcttccaacatataatt 27468301  T
Q  101 tctcacttcaatgggctataaatcttacact 131  Q
    |||  ||| ||||| |||| |||||||||||    
T  27468300 tcttccttgaatggactatgaatcttacact 27468270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 27475652 - 27475526
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||| ||||||||||||||||||||||||| || |||||||| ||||| ||||| |||||||| ||||| ||| | |||||||| |||   ||||| |||    
T  27475652 tcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgctccgaagatgtcttccaacatataact 27475553  T
Q  101 tctcacttcaatgggctataaatctta 127  Q
    |||  ||| |||||||||| |||||||    
T  27475552 tcttgcttgaatgggctatgaatctta 27475526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 27431214 - 27431118
Alignment:
Q  8 ttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctc 104  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||  || || ||||||||||| |||| |||||| ||||||||  ||||||||||||    
T  27431214 ttgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctc 27431118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27415688 - 27415771
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgt 84  Q
    |||| |||||||||||||||| |||||||| || |||||||| ||| | ||||| |||||||| ||||| ||||||||||||||    
T  27415688 tcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctcaccattccttgcacagaagatgt 27415771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27524591 - 27524674
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgt 84  Q
    |||| ||||||||| |||||| |||||||| || |||||||| ||||||||||| |||||||| ||||| ||||| ||||||||    
T  27524591 tcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgcaccgaagatgt 27524674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 27563408 - 27563337
Alignment:
Q  12 tgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatg 83  Q
    ||||||||||||| ||||| || |||||||| ||||||||||| |||||||||||||| ||||| |||||||    
T  27563408 tgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgcactgaagatg 27563337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27570122 - 27570041
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagat 82  Q
    |||| ||||| |||||||||| |||||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||||    
T  27570122 tcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgcaccgaagat 27570041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 27412731 - 27412875
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||| |||| ||||||||||| || ||||| || |||||||| ||||||||||| |||||||| ||||| ||||| |||||||| ||    ||||| ||     
T  27412731 tcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcctcaccattccttgcacggaagatgtctttcaacatataaca 27412830  T
Q  101 tctcacttcaatgggctataaatcttacactaaaggagactgaca 145  Q
    |||| ||  |||||||||| ||||| |||| ||| || |||||||    
T  27412831 tctcgctcgaatgggctatgaatctgacaccaaaagaaactgaca 27412875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 27423296 - 27423412
Alignment:
Q  8 ttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcact 107  Q
    ||||||||||||||||||||||| || || ||  | ||||| ||||| ||||||||  |||| ||||| ||||||||||||   ||||| ||||||||||    
T  27423296 ttgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctcact 27423395  T
Q  108 tcaatgggctataaatc 124  Q
    | ||||| |||| ||||    
T  27423396 tgaatggactatgaatc 27423412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 27523469 - 27523369
Alignment:
Q  8 ttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcact 107  Q
    ||||||||  ||||||||||| |||| | |||||||||||||||||| || || || ||||| |||| ||||||  |||||||  |||||||||||||||    
T  27523469 ttgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaaagaagacattttcttagatattacttctcact 27523370  T
Q  108 t 108  Q
    |    
T  27523369 t 27523369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 27585766 - 27585837
Alignment:
Q  12 tgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatg 83  Q
    ||||||||||||| ||||| || |||||||| ||||||||||| || ||||| ||||| |||||||||||||    
T  27585766 tgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccattccttgcacagaagatg 27585837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 27420481 - 27420599
Alignment:
Q  7 cttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcac 106  Q
    |||| |||||||||  |||||||| || |||||||| ||||| ||||| |||||||| ||||| ||||| |||||||| ||    ||||| ||||||  |    
T  27420481 cttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgcacggaagatgtctttcaacatataacttcttgc 27420580  T
Q  107 ttcaatgggctataaatct 125  Q
    ||||||||||||| |||||    
T  27420581 ttcaatgggctatgaatct 27420599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 27490034 - 27490095
Alignment:
Q  8 ttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattcc 69  Q
    ||||||| ||||||||||||||| || |||||||| ||||||||||| |||||||| |||||    
T  27490034 ttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcc 27490095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 27516675 - 27516575
Alignment:
Q  8 ttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcact 107  Q
    |||||||  ||||| |||||| |||| | |||||||||||||||||| || ||||| ||||| |||| |||||| ||||||||  |||| |||||| |||    
T  27516675 ttgttgaaccaagctgaggaacaatttgaatatgaccatccaatggggggtctcactattccttgcaaagaagaagttttcttagatatcacttctaact 27516576  T
Q  108 t 108  Q
    |    
T  27516575 t 27516575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 27479969 - 27480075
Alignment:
Q  2 caaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattactt 101  Q
    ||||| |||||||  ||||| |||||| |||| | |||||| ||||||||||| || ||||| ||||| |||| ||||||  |||||||  |||||| ||    
T  27479969 caaaagttgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttagatattaatt 27480068  T
Q  102 ctcactt 108  Q
    |||||||    
T  27480069 ctcactt 27480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 27505768 - 27505668
Alignment:
Q  8 ttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcact 107  Q
    |||||||  ||||| |||||| |||| | |||||||||||||||||| || ||||| ||||| |||| ||||||  |||||||  |||| | ||||||||    
T  27505768 ttgttgaaccaagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgcagagaagagattttcttagatatcatttctcact 27505669  T
Q  108 t 108  Q
    |    
T  27505668 t 27505668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 27554391 - 27554479
Alignment:
Q  16 tcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctc 104  Q
    |||||| |||||| |||| |||||||| ||||||| |||  | ||||||||||| || | |||||| ||||||||  ||||||||||||    
T  27554391 tcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttgtagagaagacgttttcttagatattacttctc 27554479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 27497388 - 27497273
Alignment:
Q  8 ttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcact 107  Q
    |||||||||||||| |||||||| || |||||||| ||||| |  || |||||||| ||||| ||||| ||| |||| |||   |  || ||||||| ||    
T  27497388 ttgttgagtcaagctgaggaagagtttggatatgatcatcccacaggtggcctcaccattccttgcactgaaaatgtcttccaacgcataacttctcgct 27497289  T
Q  108 tcaatgggctataaat 123  Q
    | ||||||||||||||    
T  27497288 tgaatgggctataaat 27497273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 27498487 - 27498550
Alignment:
Q  6 acttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattcc 69  Q
    |||||||||  |||||||||||| |||||| |||||| ||||||||||| || ||||| |||||    
T  27498487 acttgttgaaccaagccgaggaacaattcgaatatgatcatccaatgggtggtctcactattcc 27498550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 27500380 - 27500322
Alignment:
Q  32 ttcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttctt 90  Q
    ||||||||||||||||||||||| ||| |||| ||||| |||| ||||||  |||||||    
T  27500380 ttcggatatgaccatccaatgggtggcatcactattccttgcagagaagaccttttctt 27500322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 27507861 - 27507783
Alignment:
Q  26 gaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctc 104  Q
    |||||||| |||||||||||||||||||| || || |||||||| ||   ||||||| |||||||  |||| |||||||    
T  27507861 gaagaatttggatatgaccatccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctc 27507783  T

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Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 27557571 - 27557645
Alignment:
Q  16 tcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttctt 90  Q
    |||||| |||||| |||| | |||||  ||||||||||| || ||||| ||||| |||| |||||||||||||||    
T  27557571 tcaagctgaggaacaatttgaatatgttcatccaatgggtggtctcactattccatgcagagaagatgttttctt 27557645  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 27460567 - 27460652
Alignment:
Q  23 gaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcactt 108  Q
    |||||| |||| | |||||| ||||||||||| || ||||| ||||| |||| ||||||  |||||||| |||| || ||||||||    
T  27460567 gaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcactt 27460652  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 27476776 - 27476861
Alignment:
Q  23 gaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcactt 108  Q
    |||||| |||| | |||||| ||||||||||| || || || ||||| |||| ||||||  |||||||| ||||||| ||||||||    
T  27476776 gaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttggatattacctctcactt 27476861  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27502880 - 27502827
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatggg 54  Q
    |||| ||||| |||| ||||| | ||||||||| ||||||||||||||||||||    
T  27502880 tcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatggg 27502827  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 27487057 - 27487157
Alignment:
Q  8 ttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcact 107  Q
    |||||||  ||||| || ||| |||| | |||||| ||||||||||| || || || ||||| |||| ||||||  |||||||  |||||||||||||||    
T  27487057 ttgttgaaccaagctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgcaaagaagacattttcttagatattacttctcact 27487156  T
Q  108 t 108  Q
    |    
T  27487157 t 27487157  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 27559288 - 27559224
Alignment:
Q  26 gaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttctt 90  Q
    ||||| || |||||||| ||||||||||| || ||||||||||| ||||  ||||||| ||||||    
T  27559288 gaagagtttggatatgatcatccaatgggtggtctcacaattccttgcagtgaagatgctttctt 27559224  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 27567347 - 27567411
Alignment:
Q  26 gaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttctt 90  Q
    |||||||| || ||||| ||||||||||| || ||||||||||| ||||  ||||||| ||||||    
T  27567347 gaagaatttggttatgatcatccaatgggtggtctcacaattccttgcagcgaagatgctttctt 27567411  T

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Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 3073636 - 3073757
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||| ||||| ||||||  || ||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |||||| |||||    
T  3073636 tcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgtttttttgcatgttact 3073735  T
Q  101 tctcacttcaatgggctataaa 122  Q
    |||  ||||||||| |||||||    
T  3073736 tctagcttcaatggtctataaa 3073757  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 1754761 - 1754877
Alignment:
Q  7 cttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattacttctcac 106  Q
    ||||||||||||||| | |||||| || |||||||| ||||||||||| |||||||| ||||  |||||||||||||| |||    |||| ||||||  |    
T  1754761 cttgttgagtcaagctgcggaagagtttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtcttcgaaaatataacttctagc 1754860  T
Q  107 ttcaatgggctataaat 123  Q
    || ||||||||||||||    
T  1754861 ttaaatgggctataaat 1754877  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 1756830 - 1756705
Alignment:
Q  1 tcaaaacttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccctgcacagaagatgttttcttgcatattact 100  Q
    |||| |||||||||||||||| || |||||||| |||||||| || || ||||| |||||||| ||||| ||||| |||||||  |||   ||||||||     
T  1756830 tcaatacttgttgagtcaagctgaagaagaatttggatatgatcaccccatgggtggcctcaccattccttgcaccgaagatgccttccaacatattacc 1756731  T
Q  101 tctcacttcaatgggctataaatctt 126  Q
    |||  ||| |||||||||| ||||||    
T  1756730 tcttgcttgaatgggctatgaatctt 1756705  T

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