View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_low_11 (Length: 335)
Name: NF1898_low_11
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 33637706 - 33637394
Alignment:
| Q |
8 |
agattattctctgcatagtattgtgccgactccattgatctcagaacacttgctgttccagcttgctgaggtaagccaaatgcagcctcaggtttccggt |
107 |
Q |
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| T |
33637706 |
agattgttctctgcatagtattgtgccgactccattgatctcagaacacttgctgttccagcttgctgaggtaagccaaatgcagcctcaggtttccggt |
33637607 |
T |
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| Q |
108 |
ccccattaaacccaaatttacatcccactgaacatgacttccattcctgcatttgaattaactaataactttaaacaaacaacaagacttcataagaaca |
207 |
Q |
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| T |
33637606 |
ccccattaaacccaaatttacatcccactgaacatgacttccattcctgcatttgaattaactaataactttaaacaaacaacaagacttcataagaaca |
33637507 |
T |
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| Q |
208 |
ataaccaggagataacatatgtgaatacactttgctagaaagtaaaaacccatgataaatcttgtcactgaaaatcaaaatatccacattttggctgcta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33637506 |
ataaccaggagataacatatgtgaatacactttgctagaaagtaaaaacccatgataaatcttgtcactgaaaatcaaaatatccacattttggctgcta |
33637407 |
T |
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| Q |
308 |
aaaagaacatttt |
320 |
Q |
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||||||||||||| |
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| T |
33637406 |
aaaagaacatttt |
33637394 |
T |
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