View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_low_12 (Length: 331)
Name: NF1898_low_12
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 1668372 - 1668677
Alignment:
| Q |
19 |
acaacaccatttcctaacacttcactcccttttccaaaactcattcggcttgaaattttgatatcggtgaggaaaggaaccaaacattgagaaaactttt |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1668372 |
acaacaccatttcctaacacttgactcccttttccaaaactcattcggcttgaaattttgatatcggtgaggaaaggaaccaaacattgagaaaactttt |
1668471 |
T |
|
| Q |
119 |
tgcctccaaataaaggacctatttgagaaacaagtgacgttggtcctcctccaagaccaatgagacccatctcatggtcattaaaactcccagtgttgtt |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
1668472 |
tgcctccaaataaaggacctatttgagaaatgagtgatgttggtcctcctccaagaccaattagacccatctcatggtcattaaaacccccagtgttgtt |
1668571 |
T |
|
| Q |
219 |
atgtccacaaccaaaaagaaatcttgaaagggaaacaggtttacccgtgtttgatgtaaaggtagccgtgtcttgtgcaagaacaccctttgttagagaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1668572 |
atgtccacaaccaaaaagaaatcttgaaagggaaacaggtttacccgtgtttgatgtaaaggtagccgtgtcttgtgcaagaacaccctttgttagagaa |
1668671 |
T |
|
| Q |
319 |
ttatct |
324 |
Q |
| |
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|||||| |
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| T |
1668672 |
ttatct |
1668677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 22 - 324
Target Start/End: Original strand, 1661113 - 1661415
Alignment:
| Q |
22 |
acaccatttcctaacacttcactcccttttccaaaactcattcggcttgaaattttgatatcggtgaggaaaggaaccaaacattgagaaaactttttgc |
121 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1661113 |
acaccatcccctaacacttgactcccttttccaaaactcattcggcttgaaattttgatatcggtgaggaaaggaaccaaacattgagaaaactttttgc |
1661212 |
T |
|
| Q |
122 |
ctccaaataaaggacctatttgagaaacaagtgacgttggtcctcctccaagaccaatgagacccatctcatggtcattaaaactcccagtgttgttatg |
221 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1661213 |
ctccaaataaaggacctatttgagaaatgagtgatgttggtcctcctccaagaccaattagacccatctcatggtcattaaaacccccagtgttgttatg |
1661312 |
T |
|
| Q |
222 |
tccacaaccaaaaagaaatcttgaaagggaaacaggtttacccgtgtttgatgtaaaggtagccgtgtcttgtgcaagaacaccctttgttagagaatta |
321 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1661313 |
tccacaaccaaaaagaaatcttgaaagggaaacaagtttacccgtgtttgatgtaaaggtagccgtgtcttgtgcaagaacaccctttgttagagaatta |
1661412 |
T |
|
| Q |
322 |
tct |
324 |
Q |
| |
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||| |
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|
| T |
1661413 |
tct |
1661415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 31 - 324
Target Start/End: Original strand, 1679920 - 1680213
Alignment:
| Q |
31 |
cctaacacttcactcccttttccaaaactcattcggcttgaaattttgatatcggtgaggaaaggaaccaaacattgagaaaactttttgcctccaaata |
130 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1679920 |
cctaacacttcactcccttttccaaaactcatttggcttgaaattgttatgtcggtgaggaaaggaaccaaacattgagaaaactttttgcctccaaata |
1680019 |
T |
|
| Q |
131 |
aaggacctatttgagaaacaagtgacgttggtcctcctccaagaccaatgagacccatctcatggtcattaaaactcccagtgttgttatgtccacaacc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
1680020 |
aaggacctatttgagaaacaagtgacgttggtcctcctccaagaccaatgagacccatctcatggtcattaaaattccctgtgttgttatgtccacaacc |
1680119 |
T |
|
| Q |
231 |
aaaaagaaatcttgaaagggaaacaggtttacccgtgtttgatgtaaaggtagccgtgtcttgtgcaagaacaccctttgttagagaattatct |
324 |
Q |
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|||||||| || | |||||||| |||||| |||||||||||||| |||||| | || |||||||||||||||||||| ||||||||| ||||| |
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| T |
1680120 |
aaaaagaattccttgaagggaaataggtttccccgtgtttgatgttaaggtaactgtttcttgtgcaagaacacccttggttagagaactatct |
1680213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 24546814 - 24547027
Alignment:
| Q |
22 |
acaccatttcctaacacttcactcccttttccaaaactcattcggcttgaaattttgatatcggtgaggaaaggaaccaaacattgagaaaactttttgc |
121 |
Q |
| |
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|||||||| || || |||||||| ||||| |||||||||||| |||||| ||| | | ||| |||| ||||||||||||||||||||| | |||| |
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| T |
24546814 |
acaccattccccaatacttcacttcctttaccaaaactcattgggcttgtaatactagggttagtgtggaatggaaccaaacattgagaaaacatcttgc |
24546913 |
T |
|
| Q |
122 |
ctccaaataaaggacctatttgagaaacaagtgacgttggtcctcctccaagaccaatgagacccatctcatggtcattaaaactcccagtgttgttatg |
221 |
Q |
| |
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||||||| ||| ||||||||||||||| |||||| ||||||| ||||||||| || | ||||||||| | |||||| ||| ||| |||||||||| |
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| T |
24546914 |
ctccaaaagaagaacctatttgagaaacgagtgacaagggtcctcttccaagacctattatacccatctctttgtcattgaaaacaccattgttgttatg |
24547013 |
T |
|
| Q |
222 |
tccacaaccaaaaa |
235 |
Q |
| |
|
|||||| ||||||| |
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|
| T |
24547014 |
tccacatccaaaaa |
24547027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 15798000 - 15798097
Alignment:
| Q |
94 |
ggaaccaaacattgagaaaactttttgcctccaaataaaggacctatttgagaaacaagtgacgttggtcctcctccaagaccaatgagacccatctc |
191 |
Q |
| |
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||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||||||| ||||||| ||||||||| || | ||||||||| |
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| T |
15798000 |
ggaaccaaacattgagaaaacatgttgcctccaagggaagaacctatttgagaaacaagtgacaagggtcctcttccaagacctattatacccatctc |
15798097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 15797928 - 15797980
Alignment:
| Q |
22 |
acaccatttcctaacacttcactcccttttccaaaactcattcggcttgaaat |
74 |
Q |
| |
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|||||||| || || |||||||| ||||| |||||||||||| |||||||||| |
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| T |
15797928 |
acaccattccccaatacttcacttcctttaccaaaactcattgggcttgaaat |
15797980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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