View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1898_low_13 (Length: 315)

Name: NF1898_low_13
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1898_low_13
NF1898_low_13
[»] chr1 (1 HSPs)
chr1 (13-315)||(44609075-44609377)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 315
Target Start/End: Complemental strand, 44609377 - 44609075
Alignment:
Q  13 aaaatcaaactaacatagaagtaaaggaaccaattgtgaaaaccaagacgnnnnnnnttcaaaaactattttaagaattccctgcaagtttactcgagct 112  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  44609377 aaaatcaaactaacatagaagtaaaggaaccaattgcgaaaaccaagacgaaaaaaattcaaaaactattttaagaattccctgcaagtttactcgagct 44609278  T
Q  113 caccgaagtttactgaagtcattgcgagttcagccgagtaaactccgtttcatttatgagtttaccaaagttcgagtttaaaggcgaatcaactcgaaat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44609277 caccgaagtttactgaagtcattgcgagttcagccgagtaaactccgtttcatttatgagtttaccaaagttcgagtttaaatgcgaatcaactcgaaat 44609178  T
Q  213 tgatacctaaactcgggaaatcatacaactccacgagttaactcgcaattgcttaagagagtgtattgctagtgttacttcaatccaaatttcacaagac 312  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44609177 tgatacctaaactcgggaaatcattcgactccacgagttaactcgcaattgcttaagagagtgtattgctagtgttacttcaatccaaatttcacaagac 44609078  T
Q  313 aga 315  Q
    |||    
T  44609077 aga 44609075  T

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