View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_low_14 (Length: 299)
Name: NF1898_low_14
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_low_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 35 - 299
Target Start/End: Complemental strand, 43017794 - 43017530
Alignment:
| Q |
35 |
tgaaatattctgtttggaattatagcacaaagttatgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaatc |
134 |
Q |
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| T |
43017794 |
tgaaatattctgtttggaattatagcacaaagttatgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaatc |
43017695 |
T |
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| Q |
135 |
aaggctatccaaaaataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtg |
234 |
Q |
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| T |
43017694 |
aaggctatccaaaaataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtg |
43017595 |
T |
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| Q |
235 |
actctttcaaaagctgaatttttcataaaatattagaataagtcttgccctatatgtgactcatt |
299 |
Q |
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| T |
43017594 |
actctttcaaaagctgaatttttcataaaatattagaataagtcttgccctatatgtgactcatt |
43017530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 35 - 289
Target Start/End: Complemental strand, 35057671 - 35057433
Alignment:
| Q |
35 |
tgaaatattctgtttggaattatagcacaaagttatgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaa-t |
133 |
Q |
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| T |
35057671 |
tgaaatattatatctggaattatagcacaaagttctgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaat |
35057572 |
T |
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| Q |
134 |
caaggctatccaaaaataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagt |
233 |
Q |
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| T |
35057571 |
taacgccatccaaaaatgaagtt-----------------tcccaaaatttactgaccttgccttatttttttcacctcataaacggtttttatgcaagt |
35057489 |
T |
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| Q |
234 |
gactctttcaaaagctgaatttttcataaaatattagaataagtcttgccctatat |
289 |
Q |
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| T |
35057488 |
gactctttcaaaagctgaatttttcataaaatattagaatatgtcttgccctatat |
35057433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 38569809 - 38569757
Alignment:
| Q |
99 |
tttagagttattttatttcaaaagttaat-aaaaatcaaggctatccaaaaat |
150 |
Q |
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| T |
38569809 |
tttagagttattttatttcaaaagttagtaaaaaaataaggctatccaaaaat |
38569757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 14328897 - 14328987
Alignment:
| Q |
169 |
atttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaatttttca |
259 |
Q |
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|||||| ||||| ||||| |||||||| |||||||| |||| | |||| | |||||||||||||||| ||||||| | |||||||||| |
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| T |
14328897 |
attttttccaaagtttactaaccttgcctcatttttctgacctaaaaaacagtttttatgcaagtgacttattcaaaatcagaatttttca |
14328987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 259
Target Start/End: Original strand, 14421907 - 14421997
Alignment:
| Q |
169 |
atttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaatttttca |
259 |
Q |
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|||||| ||||| ||||| |||||||| |||||||| |||| | |||| | |||||||||||||||| ||||||| | |||||||||| |
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| T |
14421907 |
attttttccaaagtttactaaccttgcctcatttttctgacctaaaaaacagtttttatgcaagtgacttattcaaaatcagaatttttca |
14421997 |
T |
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