View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1898_low_15 (Length: 286)

Name: NF1898_low_15
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1898_low_15
NF1898_low_15
[»] chr3 (12 HSPs)
chr3 (15-179)||(50911941-50912105)
chr3 (15-256)||(38024947-38025187)
chr3 (15-270)||(38033851-38034106)
chr3 (15-270)||(38036865-38037120)
chr3 (15-179)||(38031399-38031563)
chr3 (15-270)||(38028838-38029092)
chr3 (15-270)||(38040153-38040407)
chr3 (15-266)||(50909777-50910028)
chr3 (15-256)||(55084612-55084854)
chr3 (15-105)||(50904864-50904954)
chr3 (15-143)||(38043843-38043971)
chr3 (15-104)||(48840783-48840872)
[»] chr8 (2 HSPs)
chr8 (15-270)||(21607368-21607621)
chr8 (15-270)||(21604826-21605080)
[»] chr4 (17 HSPs)
chr4 (15-105)||(17970277-17970367)
chr4 (15-127)||(27557445-27557557)
chr4 (15-104)||(27502879-27502968)
chr4 (25-101)||(27498397-27498473)
chr4 (15-106)||(27431220-27431311)
chr4 (44-99)||(27527145-27527200)
chr4 (15-117)||(27425778-27425880)
chr4 (15-104)||(27444866-27444955)
chr4 (47-127)||(27554265-27554345)
chr4 (15-102)||(27414376-27414463)
chr4 (15-114)||(27570121-27570220)
chr4 (25-99)||(27501301-27501375)
chr4 (25-114)||(27415593-27415679)
chr4 (25-102)||(27513858-27513935)
chr4 (25-114)||(27566033-27566122)
chr4 (47-99)||(27446131-27446183)
chr4 (15-99)||(27556451-27556535)
[»] chr2 (1 HSPs)
chr2 (15-105)||(3073547-3073637)
[»] chr5 (2 HSPs)
chr5 (15-100)||(1754313-1754398)
chr5 (25-104)||(1756839-1756918)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 50911941 - 50912105
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50911941 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 50912040  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaa 179  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50912041 tgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaa 50912105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 38024947 - 38025187
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||| ||||||||||||||||||||| ||||||| |||||||| ||||| |  |||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  38024947 gaaaggaagcttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagcttt 38025046  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaannnnnnnngaagaacaagatgaatttctcagatgt 214  Q
     |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||        |||||| ||  |||||||||||||| |    
T  38025047 tgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaacggaaacccatttcaa-atgttttgaagaaaaaactgaatttctcagattt 38025145  T
Q  215 aagataagtgtatataagtttgtttgcttgagtgatttgtga 256  Q
    |||| || ||| | ||| ||||||||||||| ||||||||||    
T  38025146 aagaaaaatgtttctaaatttgtttgcttgaatgatttgtga 38025187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 38033851 - 38034106
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||| |  |||||||  || || |||||||||||||||||||||||||   ||||    
T  38033851 gaaatgaagcttggttcaagtatgacgtggggataacaaaccgcttcatttgctctccaatgtacactgcaagatagccctttggcacattcaatgcttt 38033950  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaatggc---aggtaaacggaaacccatttcaannnnnnnngaagaacaagatgaatttctcaga 211  Q
       ||||| ||| ||||   | |||||||  |||||||| ||   |||||||||||||||||||||||        ||||||||||| ||||||||||||    
T  38033951 ---tgatgtttgactactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccatttcaattttttttgaagaacaagacgaatttctcaga 38034047  T
Q  212 tgtaagataagtgtatataagtttgtttgcttgagtgatttgtgattgttgtgaaggag 270  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38034048 tgtaagataagtgtatataagtttgattgcttgagtgatttgtgattgttgtgaaggag 38034106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 38036865 - 38037120
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||||||||||||||||||| | ||||||  |||||||||||||| |  |||||||| || || |||||||||||||||||||||||||  |||||    
T  38036865 gaaatgaagcttggttcaagtatggcatggggacaacaaaccgtttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatacttt 38036964  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaatggc---aggtaaacggaaacccatttcaannnnnnnngaagaacaagatgaatttctcaga 211  Q
     |||| |   |||||||   |||| ||||  |||||||| ||   ||||||||||||||||||||||         |||||||||||||||||||||| |    
T  38036965 ggatgtt---tggctactgctaaaggaagcccgtctaatagctgcaggtaaacggaaacccatttcagttttttttgaagaacaagatgaatttctcaaa 38037061  T
Q  212 tgtaagataagtgtatataagtttgtttgcttgagtgatttgtgattgttgtgaaggag 270  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38037062 tgtaagataaatgtatataagtttgtttgcttgagtgatttgtgattgttgtgaaggag 38037120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 38031399 - 38031563
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||| ||||||||||||||||||||| ||||||| |||||||| ||||| |  |||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  38031399 gaaaggaagcttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagcttt 38031498  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaa 179  Q
     |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||    
T  38031499 tgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaatggaaacccatttcaa 38031563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 38028838 - 38029092
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||||||||||||||||||||| ||||||| ||||| || ||||| |  |||||||| || || |||||||||||||||||||||||||  |||||    
T  38028838 gaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatacttt 38028937  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaatggc---aggtaaacggaaacccatttcaannnnnnnngaagaacaagatgaatttctcaga 211  Q
       ||||| ||||||||   | |||||||  |||||||| ||   |||||||||||||||||||||||        ||||||||||||||||||||||||    
T  38028938 ---tgatgtttggctactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccatttcaaatgtttt-gaagaacaagatgaatttctcaga 38029033  T
Q  212 tgtaagataagtgtatataagtttgtttgcttgagtgatttgtgattgttgtgaaggag 270  Q
    | ||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||    
T  38029034 tataagataagtgtataaaagattgattgcttgagtgatttgtgattgttgtgaaggag 38029092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 38040153 - 38040407
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||||||||||||||||||||| ||||||| ||||| || ||||| |  |||||||| || || |||||||||||||||||||||||||  |||||    
T  38040153 gaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttggcacattcaatacttt 38040252  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaatggc---aggtaaacggaaacccatttcaannnnnnnngaagaacaagatgaatttctcaga 211  Q
       ||||| ||||||||   | |||||||  |||||||| ||   || |||||| |||||||||||||        || |||||||||||||||||||||    
T  38040253 ---tgatgtttggctactgctgaatgaagcccgtctaatagctgcagataaacgaaaacccatttcaaatgtttt-gatgaacaagatgaatttctcaga 38040348  T
Q  212 tgtaagataagtgtatataagtttgtttgcttgagtgatttgtgattgttgtgaaggag 270  Q
    |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||    
T  38040349 tgtaagataaatgtatataagtttgattgtttgagtgatttgtgattgttgtgaaggag 38040407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 50910028 - 50909777
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||||||||||||||||||||| ||||||| ||||||||   ||| |  ||||||||||| || |||||||| ||||||||||||||||  |||||    
T  50910028 gaaatgaagcttggttcaagtatgacatggggataacaaaccgcagcatttgctctccaacatacactgcaagataaccctttggcacattcaatacttt 50909929  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttcaannnnnnnngaagaacaagatgaatttctcaga 211  Q
       ||||| ||||||||   ||||||||| |||||||||    || ||||||||||||||||||||||         |  || |||||||||||||||||    
T  50909928 ---tgatgtttggctactgctaaatgaagctcgtctaatagctgctggtaaacggaaacccatttcaaatgttttgaagaaataagatgaatttctcaga 50909832  T
Q  212 tgtaagataagtgtatataagtttgtttgcttgagtgatttgtgattgttgtgaa 266  Q
    ||||||||||  ||||  ||||||| ||||||||||||||||||| |||||||||    
T  50909831 tgtaagataaaagtatccaagtttgattgcttgagtgatttgtgagtgttgtgaa 50909777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 55084854 - 55084612
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    ||||||| | |||||||||||| ||| | |||||||||||||| ||||| || ||||||||||| || |||||| | || |||||||||||||||  |||    
T  55084854 gaaatgatggttggttcaagtaagacatagggatcacaaaccgcttcattttctctccaacatacactgcaagacacccttttggcacattcacagattt 55084755  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaat---ggcaggtaaacggaaacccatttcaannnnnnnngaagaacaagatgaatttctcaga 211  Q
     ||||||| ||||||||| ||||||||||| | ||||||    ||||||||||||||| |||||||||        ||| |||||| ||||||| |||||    
T  55084754 tgatgatgtttggctacccgtaaatgaagtccttctaatagctgcaggtaaacggaaa-ccatttcaa-atgttttgaataacaagctgaatttatcaga 55084657  T
Q  212 tgtaagataagtgtatataagtttgtttgcttgagtgatttgtga 256  Q
    | ||||| ||  |||| ||| ||||||||| ||||| ||||||||    
T  55084656 tttaagaaaaaggtatctaaatttgtttgcctgagtaatttgtga 55084612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 50904864 - 50904954
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacatt 105  Q
    ||||||||| |||||||||||| ||| |  ||||||||||||| ||||| |  |||||||| || || |||||||| ||||||||||||||    
T  50904864 gaaatgaagtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatt 50904954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 38043971 - 38043843
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||| |||| ||| |||||||||||| | |||||||||||||| ||||| |  |||||||  || || |||||||||| ||||||||||||    |||||    
T  38043971 gaaacgaagtttgattcaagtatgacatagggatcacaaaccgcttcatttcctctccaaagtacactgcaagatagctctttggcacatttgtgacttt 38043872  T
Q  115 cgatgatgcttggctacctgtaaatgaag 143  Q
    | |||||| |||||| | | |||||||||    
T  38043871 caatgatgtttggctgcttctaaatgaag 38043843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 48840783 - 48840872
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacat 104  Q
    ||||||| |||||||||||||||| | ||||||| ||||| || |||||||  ||||| || || |  |||||||| |||||||||||||    
T  48840783 gaaatgaggcttggttcaagtatggcatggggattacaaatcgcttcatctcctctccgacgtacaatgcaagatatccctttggcacat 48840872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 21607368 - 21607621
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||| |||||| |||||||||||||| ||||||| |||||||| ||||| |  ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  21607368 gaaaggaagctcggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatataccgcaagatatccctttggtacattcacaacttt 21607467  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccatttcaannnnnnnngaagaacaagatgaatttctcagatgt 214  Q
     |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||        |||||| ||  |||||||||| ||| |    
T  21607468 tgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaacggaaacccatttcaa-atgttttgaagaaaaaactgaatttctctgattt 21607566  T
Q  215 aagataagtgtatataagtttgtttgcttgagtgatttgtgattgttgtgaaggag 270  Q
    |||| || ||| | ||| ||||||||||||| ||||||||||  ||||||||||||    
T  21607567 aagaaaaatgtttctaaatttgtttgcttgaatgatttgtga-agttgtgaaggag 21607621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 21604826 - 21605080
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||||||||||||||||||||| ||||||| ||||| || ||||| |  ||||| || || || |||||||||||||||||||||||||  |||||    
T  21604826 gaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctcctacttacactgcaagatagccctttggcacattcaatacttt 21604925  T
Q  115 cgatgatgcttggctacctgtaaatgaagttcgtctaatggc---aggtaaacggaaacccatttcaannnnnnnngaagaacaagatgaatttctcaga 211  Q
       ||||| ||||||||   | |||||||  |||||||| ||   |||||||||||||||||||||||        ||||||||||||||||||||||||    
T  21604926 ---tgatgtttggctactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccatttcaaatgtttt-gaagaacaagatgaatttctcaga 21605021  T
Q  212 tgtaagataagtgtatataagtttgtttgcttgagtgatttgtgattgttgtgaaggag 270  Q
    | |||||||| |||||| ||| | | |||||||||||||||||||||||||||||||||    
T  21605022 tataagataaatgtataaaagatcgattgcttgagtgatttgtgattgttgtgaaggag 21605080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 17970367 - 17970277
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacatt 105  Q
    ||||||||| |||||||||||||||| | |||||||||||||| ||||| |  |||||||| || ||||||||||| ||||||||||||||    
T  17970367 gaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacatt 17970277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 27557557 - 27557445
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    ||||||| | |||||| ||||||||| | |||||||||||||  ||||| |  |||||||||||||| |||||||| ||| ||||||||| |||| | ||    
T  27557557 gaaatgatggttggtttaagtatgacattgggatcacaaacctcttcatttcctctccaacatatacggcaagatatccccttggcacatccacaccctt 27557458  T
Q  115 cgatgatgcttgg 127  Q
     || |||||||||    
T  27557457 tgaagatgcttgg 27557445  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 27502879 - 27502968
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacat 104  Q
    ||||||||| ||| ||||| |||||| | || ||||||||||| |||||||| ||||| ||||| || |||||||| || ||||||||||    
T  27502879 gaaatgaagtttgattcaaatatgacattggaatcacaaaccgcttcatcttctctcctacataaacggcaagatatccttttggcacat 27502968  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 27498473 - 27498397
Alignment:
Q  25 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggca 101  Q
    |||||||||||||||  | ||||||||||| |||||||| |  |||||||||||||| || ||||| ||||||||||    
T  27498473 ttggttcaagtatgatatagggatcacaaaacgtttcatttcctctccaacatatactgctagatatccctttggca 27498397  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 27431220 - 27431311
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattc 106  Q
    ||||||| | |||||||||||||||  | |||||||||||||  ||||| |  || ||||||||||| |||| ||| |||||||||||||||    
T  27431220 gaaatgacggttggttcaagtatgatattgggatcacaaacctcttcatttcatccccaacatatactgcaatatatccctttggcacattc 27431311  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 27527200 - 27527145
Alignment:
Q  44 gggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 99  Q
    ||||||||||||||||||   || ||||||||||| ||||||||||||||||||||    
T  27527200 gggatcacaaaccgtttctgtttatctccaacatacaccgcaagatagccctttgg 27527145  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 27425880 - 27425778
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    ||||||| | |||||||||||||||  | ||||||||| |||| ||    || |||||||||||||| |||||||| ||||||||||| | |||| ||||    
T  27425880 gaaatgatggttggttcaagtatgatattgggatcacataccgcttttgtttctctccaacatatactgcaagatatccctttggcacgtccacagcttt 27425781  T
Q  115 cga 117  Q
    |||    
T  27425780 cga 27425778  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 27444866 - 27444955
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacat 104  Q
    ||||||| | |||| ||||||||||  | |||||||||||||  ||||| |  |||||||| ||||| |||||||| |||||||||||||    
T  27444866 gaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttggcacat 27444955  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 27554345 - 27554265
Alignment:
Q  47 atcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaactttcgatgatgcttgg 127  Q
    ||||||||||| ||||| |  |||||||||||||| ||||| || ||||||||||||| |||  |||| || |||||||||    
T  27554345 atcacaaaccgcttcatttcctctccaacatatactgcaaggtatccctttggcacatccactccttttgaagatgcttgg 27554265  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 27414376 - 27414463
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcac 102  Q
    ||||||| | |||||||||||||||    || |||||||||||| |||| || |||||||| || || ||||||||||| ||||||||    
T  27414376 gaaatgagggttggttcaagtatgatacaggaatcacaaaccgtctcattttatctccaacgtagactgcaagatagccttttggcac 27414463  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 27570121 - 27570220
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    ||||||||| |||| | ||||||||   |||||||||| ||||  ||   || |||||||||||||| |||||||| ||||||||||||| |||| ||||    
T  27570121 gaaatgaaggttggcttaagtatgatacggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttggcacatccacagcttt 27570220  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 27501375 - 27501301
Alignment:
Q  25 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 99  Q
    |||||| ||||||||  | |||||||||||||||||||| |  |||||||||||||| || ||| | ||||||||    
T  27501375 ttggtttaagtatgatattgggatcacaaaccgtttcatttcctctccaacatatactgctagacatccctttgg 27501301  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 27415679 - 27415593
Alignment:
Q  25 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtct-ccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||||||||||  ||||||||||||| || ||    |||| | |||||||| || |||||||| ||||||||||||| |||||||||    
T  27415679 ttggttcaagtatgatatggggatcacaaatcgctt----ttgttttccaacatacactgcaagatatccctttggcacatccacaacttt 27415593  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 27513858 - 27513935
Alignment:
Q  25 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcac 102  Q
    |||||||||||||||  | |||||||||||||| ||||| || ||||| ||||| || || ||||| || ||||||||    
T  27513858 ttggttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttggcac 27513935  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 27566033 - 27566122
Alignment:
Q  25 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttt 114  Q
    |||||||| ||||||  ||||||||||||| || ||    || ||||||||||| || |||||||| ||||||||||| | |||||||||    
T  27566033 ttggttcaggtatgatatggggatcacaaatcgcttttgtttctctccaacatacactgcaagatatccctttggcacgtccacaacttt 27566122  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 27446183 - 27446131
Alignment:
Q  47 atcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 99  Q
    |||||||| || ||||| || ||||||||||| |||||||||||||| |||||    
T  27446183 atcacaaatcgcttcattttttctccaacataaaccgcaagatagccttttgg 27446131  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 27556451 - 27556535
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 99  Q
    ||||||||| |||||||||  ||||  |||| |||||||| || ||||| || ||||||||||| || || |||||||| |||||    
T  27556451 gaaatgaaggttggttcaataatgaaatgggaatcacaaatcgcttcattttttctccaacataaactgcgagatagccttttgg 27556535  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 3073637 - 3073547
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacatt 105  Q
    ||||||||| |||||||||||||||| | |||||||||||||| ||||| |  |||||||| || ||||||||||| ||||||||||||||    
T  3073637 gaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacatt 3073547  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 1754313 - 1754398
Alignment:
Q  15 gaaatgaagcttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggc 100  Q
    ||||||| | |||||||||||||||   ||||||||||||||| ||||| |  |||||||||||||| || ||||| || ||||||    
T  1754313 gaaatgacgattggttcaagtatgatacggggatcacaaaccgcttcatttcttctccaacatatacagctagatatccttttggc 1754398  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 1756839 - 1756918
Alignment:
Q  25 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacat 104  Q
    |||||||||||||||  | |||||||||||||| |||   || ||||||||||  || ||||||||||||||||| ||||    
T  1756839 ttggttcaagtatgatattgggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctttggtacat 1756918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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