View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_low_16 (Length: 268)
Name: NF1898_low_16
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 27065908 - 27066160
Alignment:
| Q |
1 |
cttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactaccactatcac |
100 |
Q |
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| T |
27065908 |
cttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactaccactatcac |
27066007 |
T |
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| Q |
101 |
taagagagttagttgaagcagtagttttattataactagcaaaagaaatacctttcttgtcataatccttaaatgtattattattcccattgtaaacttt |
200 |
Q |
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| T |
27066008 |
tgagagagttagttgaagtagtagttttattataactagcaaaagaaatacctttcttgtcataatccttaaatgtattattattcccattgtaaacttt |
27066107 |
T |
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| Q |
201 |
aaacgaaaccttatgatctaaatcagcacctttagcatagcctttgaaagttt |
253 |
Q |
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| T |
27066108 |
aaacgaaaccttatgatctaaatcagcacctttagcatagcctttgaaagttt |
27066160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 27079628 - 27079810
Alignment:
| Q |
4 |
atatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactaccactatcactaa |
103 |
Q |
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| T |
27079628 |
atatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaacccatttttttgccaaactaacactttcactaa |
27079727 |
T |
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| Q |
104 |
gagagttagttgaagcagtag---ttttattataactagcaaaagaaatacctttcttgtcataatccttaaatgtattatta |
183 |
Q |
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| T |
27079728 |
cagaatttgttgaagaagaagatttcttagtataaccagcaaaagaaataccttttttatcgtaatccttaaacgtgttatta |
27079810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 27053470 - 27053538
Alignment:
| Q |
5 |
tatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaacca |
73 |
Q |
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| T |
27053470 |
tatctggcataggcataacagtcccttccttcaacatcctttcgcggaaaaacttacctggttcaacca |
27053538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 14866127 - 14866036
Alignment:
| Q |
4 |
atatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactaccact |
95 |
Q |
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||||| ||||||||||| || || ||||| |||||||||||||| | |||||||||||||| | |||| |||||| ||||||||||||| |
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| T |
14866127 |
atatcaggcataggcattaccgtaccttctttcaacattttctctctaaaaaacttaccaggctcaacccatttttttaccaaactaccact |
14866036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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