View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1898_low_17 (Length: 262)

Name: NF1898_low_17
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1898_low_17
NF1898_low_17
[»] scaffold1678 (2 HSPs)
scaffold1678 (17-126)||(1090-1199)
scaffold1678 (187-246)||(970-1029)
[»] scaffold0786 (2 HSPs)
scaffold0786 (17-122)||(3301-3406)
scaffold0786 (189-246)||(3473-3530)
[»] scaffold0390 (4 HSPs)
scaffold0390 (17-122)||(1833-1938)
scaffold0390 (17-122)||(14817-14922)
scaffold0390 (187-246)||(2003-2062)
scaffold0390 (187-246)||(14987-15046)
[»] chr2 (12 HSPs)
chr2 (17-122)||(22139326-22139431)
chr2 (17-125)||(32241460-32241566)
chr2 (17-126)||(32295041-32295150)
chr2 (17-126)||(24433820-24433922)
chr2 (187-246)||(24433697-24433756)
chr2 (187-246)||(32241339-32241398)
chr2 (187-246)||(32276349-32276408)
chr2 (51-126)||(32276212-32276288)
chr2 (51-126)||(32302743-32302819)
chr2 (187-246)||(32302881-32302940)
chr2 (187-246)||(22139202-22139261)
chr2 (189-246)||(32295208-32295265)


Alignment Details
Target: scaffold1678 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: scaffold1678
Description:

Target: scaffold1678; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 1199 - 1090
Alignment:
Q  17 ataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1199 ataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttca 1100  T
Q  117 ttacaagggg 126  Q
    ||||||||||    
T  1099 ttacaagggg 1090  T

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Target: scaffold1678; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 1029 - 970
Alignment:
Q  187 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtctt 246  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1029 ggcaagatcattttctatcgttgctctcattgtctcagctttttgcttctcatatgtctt 970  T

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Target: scaffold0786 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0786
Description:

Target: scaffold0786; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 3301 - 3406
Alignment:
Q  17 ataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||    
T  3301 ataacaaactccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcctatataagtcttggtagtatcacattgtttttca 3400  T
Q  117 ttacaa 122  Q
    | ||||    
T  3401 tcacaa 3406  T

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Target: scaffold0786; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 3473 - 3530
Alignment:
Q  189 caagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtctt 246  Q
    |||||| |||| || |||||||||||||||||||||| ||||||||| ||| ||||||    
T  3473 caagattatttactgtcgttgctctcattgtctcagccttttgcttcgcatctgtctt 3530  T

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Target: scaffold0390 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 1833 - 1938
Alignment:
Q  17 ataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||    
T  1833 ataacaaactccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcctatataagtcttggtagtatcacattgtttttca 1932  T
Q  117 ttacaa 122  Q
    | ||||    
T  1933 tcacaa 1938  T

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Target: scaffold0390; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 14817 - 14922
Alignment:
Q  17 ataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttca 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||| |||||||||||||    
T  14817 ataacaaaatccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcctatataagtcttggtagtatgacattgtttttca 14916  T
Q  117 ttacaa 122  Q
    | ||||    
T  14917 tcacaa 14922  T

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Target: scaffold0390; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 2003 - 2062
Alignment:
Q  187 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtctt 246  Q
    |||||||| |||| || |||||||||||||||||||||| ||||||||| ||| ||||||    
T  2003 ggcaagattatttactgtcgttgctctcattgtctcagccttttgcttcgcatctgtctt 2062  T

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Target: scaffold0390; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 14987 - 15046
Alignment:
Q  187 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtctt 246  Q
    |||||||| |||| || |||||||||||||||||||||| ||||||||| ||| ||||||    
T  14987 ggcaagattatttactgtcgttgctctcattgtctcagccttttgcttcgcatctgtctt 15046  T

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Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 22139431 - 22139326
Alignment:
Q  17 ataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||    
T  22139431 ataacaaactccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcctatataagtcttggtagtatcacattgtttttca 22139332  T
Q  117 ttacaa 122  Q
    | ||||    
T  22139331 tcacaa 22139326  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 32241566 - 32241460
Alignment:
Q  17 ataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||  || |||||||||||||||||||||    
T  32241566 ataacaaactccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcctatataag--ttggtagtatcacattgtttttca 32241469  T
Q  117 ttacaaggg 125  Q
    | |||||||    
T  32241468 tcacaaggg 32241460  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 32295041 - 32295150
Alignment:
Q  17 ataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttca 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| |||| ||||||||||||    
T  32295041 ataacaaaatccataattagttaattaccacacacaaacgattggaccaagattattgcatgctcctatataagacttggtaatatcccattgtttttca 32295140  T
Q  117 ttacaagggg 126  Q
    | ||||||||    
T  32295141 tcacaagggg 32295150  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 24433922 - 24433820
Alignment:
Q  17 ataacaaactccataattagttaattaccacacacaaacgattggaccaagattcttgcatgctcctacataagactttgtagtatcacattgtttttca 116  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||       | ||||| ||| |||||||||||||||||||||    
T  24433922 ataaaaaactccataatttgttaattaccacacacaaacgattggaccaagattattgca-------atataagtcttggtagtatcacattgtttttca 24433830  T
Q  117 ttacaagggg 126  Q
    | ||||||||    
T  24433829 tcacaagggg 24433820  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 24433756 - 24433697
Alignment:
Q  187 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtctt 246  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  24433756 ggcaatatcatttgctgtcgttgctctcattgtctcagctttttgcttctcatctgtctt 24433697  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 32241398 - 32241339
Alignment:
Q  187 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtctt 246  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  32241398 ggcaagatcatttgctatcgttgctctcattgtttcagctttttgcatctcatctgtctt 32241339  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 32276349 - 32276408
Alignment:
Q  187 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtctt 246  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||    
T  32276349 ggcaagatcatttgttgtcgttgctctcattgtctcagctttttgcttctcatctgtctt 32276408  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 32276212 - 32276288
Alignment:
Q  51 caaacgattggaccaagattcttgcatgctcctacataa-gactttgtagtatcacattgtttttcattacaagggg 126  Q
    |||||||||||| ||||  ||||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||    
T  32276212 caaacgattggatcaaggctcttgcatgctcctatataaagacttggtagtatcacattgtttttcatcacaagggg 32276288  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 32302743 - 32302819
Alignment:
Q  51 caaacgattggaccaagattcttgcatgctcctacataa-gactttgtagtatcacattgtttttcattacaagggg 126  Q
    ||||||||||||||||   ||||||||||||||| |||| ||||| |||||||| ||||||||||||| ||||||||    
T  32302743 caaacgattggaccaaagctcttgcatgctcctatataaagacttggtagtatcccattgtttttcatcacaagggg 32302819  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 32302881 - 32302940
Alignment:
Q  187 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtctt 246  Q
    |||||| |||||| || ||||||||||||||||||| |||||||||||||||| ||||||    
T  32302881 ggcaaggtcattttctgtcgttgctctcattgtctctgctttttgcttctcatctgtctt 32302940  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 22139261 - 22139202
Alignment:
Q  187 ggcaagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtctt 246  Q
    |||||||| |||| || |||||||||||||||||||||| ||||||||| ||| ||||||    
T  22139261 ggcaagattatttactgtcgttgctctcattgtctcagccttttgcttcgcatctgtctt 22139202  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 32295208 - 32295265
Alignment:
Q  189 caagatcatttgctatcgttgctctcattgtctcagctttttgcttctcatatgtctt 246  Q
    |||| ||||||| | |||||||||||||||| || |||||||||||||||| ||||||    
T  32295208 caaggtcatttgttgtcgttgctctcattgtttctgctttttgcttctcatctgtctt 32295265  T

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