View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1898_low_18 (Length: 262)

Name: NF1898_low_18
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1898_low_18
NF1898_low_18
[»] chr8 (9 HSPs)
chr8 (1-238)||(1350488-1350725)
chr8 (25-151)||(1361149-1361275)
chr8 (37-111)||(1344085-1344159)
chr8 (37-111)||(1355428-1355502)
chr8 (196-237)||(1344031-1344072)
chr8 (196-237)||(1355515-1355556)
chr8 (123-167)||(1344023-1344067)
chr8 (123-167)||(1355520-1355564)
chr8 (5-81)||(1365043-1365119)
[»] chr3 (2 HSPs)
chr3 (5-111)||(24618473-24618579)
chr3 (123-167)||(24618411-24618455)
[»] chr2 (1 HSPs)
chr2 (50-105)||(43364441-43364496)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1350725 - 1350488
Alignment:
Q  1 caacaactatgcaacgatatcctggtgattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttcc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350725 caacaactatgcaacgatatcccggtgattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttcc 1350626  T
Q  101 acttctctgtcggtcatcgggtcctgatcaatctcatcatcaaactcaaccctaggatcatcttctttctccacttgcttgtcaatttttgccgttaagg 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350625 acttctctgtcggtcattgggtcctgatcaatctcatcatcaaactcaaccctaggatcatcttctttctccacttgcttgtcaatttttgccgttaagg 1350526  T
Q  201 cctgatcaatcttatcatcaaactcaaccacatgatcc 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1350525 cctgatcaatcttatcatcaaactcaaccacatgatcc 1350488  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 1361275 - 1361149
Alignment:
Q  25 gtgattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtcggtcatcgggtcc 124  Q
    ||||||||||| |||||||||| |||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||| |||| |||||   |||     
T  1361275 gtgattgtcacaatctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagtcattaagtca 1361176  T
Q  125 tgatcaatctcatcatcaaactcaacc 151  Q
    |||||||||||||||||||||||||||    
T  1361175 tgatcaatctcatcatcaaactcaacc 1361149  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 1344159 - 1344085
Alignment:
Q  37 atctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc 111  Q
    |||||||||| |||||||| ||||||||||| |||  |||||||||||||| ||||||||||| ||||| |||||    
T  1344159 atctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtc 1344085  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 1355428 - 1355502
Alignment:
Q  37 atctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc 111  Q
    |||||||||| |||||||| ||||||||||| |||  |||||||||||||| ||||||||||| ||||| |||||    
T  1355428 atctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtc 1355502  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 1344072 - 1344031
Alignment:
Q  196 taaggcctgatcaatcttatcatcaaactcaaccacatgatc 237  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  1344072 taaggcctgatcaatctcatcatcaaactcaaccacaagatc 1344031  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 1355515 - 1355556
Alignment:
Q  196 taaggcctgatcaatcttatcatcaaactcaaccacatgatc 237  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  1355515 taaggcctgatcaatctcatcatcaaactcaaccacaagatc 1355556  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 1344067 - 1344023
Alignment:
Q  123 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 167  Q
    |||||||||||||||||||||||||||||  | ||||||||||||    
T  1344067 cctgatcaatctcatcatcaaactcaaccacaagatcatcttctt 1344023  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 1355520 - 1355564
Alignment:
Q  123 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 167  Q
    |||||||||||||||||||||||||||||  | ||||||||||||    
T  1355520 cctgatcaatctcatcatcaaactcaaccacaagatcatcttctt 1355564  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 1365119 - 1365043
Alignment:
Q  5 aactatgcaacgatatcctggtgattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaa 81  Q
    ||||||||||| || |||| ||||||| ||  || | ||| | ||||||||||||||||||||||||  ||||||||    
T  1365119 aactatgcaacaatttccttgtgattgccaacatatgtaataatttcttttattctctcttccaaagaacaatttaa 1365043  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 24618579 - 24618473
Alignment:
Q  5 aactatgcaacgatatcctggtgattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccactt 104  Q
    ||||||||||  || |||| ||||||| ||  | |||||||| ||||| || | ||||||||| |||  || ||||||||||| ||||||||||||||||    
T  24618579 aactatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccactt 24618480  T
Q  105 ctctgtc 111  Q
    | |||||    
T  24618479 ccctgtc 24618473  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 24618455 - 24618411
Alignment:
Q  123 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 167  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||    
T  24618455 cctgatcaatctcatcattaaactcaaccacaggatcatcttctt 24618411  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 43364441 - 43364496
Alignment:
Q  50 tcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttc 105  Q
    |||| ||||||||||| ||| |  |||||||||||||| |||||||||||||||||    
T  43364441 tcttgtattctctcttgcaaggaacaatttaatctgcgggcaaattcttccacttc 43364496  T

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