View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1898_low_20 (Length: 251)

Name: NF1898_low_20
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1898_low_20
NF1898_low_20
[»] chr1 (16 HSPs)
chr1 (18-251)||(15898141-15898371)
chr1 (41-175)||(13651675-13651809)
chr1 (32-175)||(13508177-13508320)
chr1 (32-175)||(13515365-13515508)
chr1 (32-175)||(13686415-13686558)
chr1 (32-175)||(19136609-19136752)
chr1 (44-175)||(20488258-20488389)
chr1 (45-175)||(13611972-13612102)
chr1 (43-172)||(13422318-13422447)
chr1 (41-163)||(13544557-13544679)
chr1 (45-147)||(20478478-20478580)
chr1 (54-147)||(20369405-20369498)
chr1 (32-147)||(13671514-13671629)
chr1 (61-147)||(13588718-13588804)
chr1 (41-155)||(13656227-13656341)
chr1 (105-151)||(16467060-16467106)
[»] scaffold0006 (6 HSPs)
scaffold0006 (41-175)||(110848-110982)
scaffold0006 (41-175)||(141436-141570)
scaffold0006 (41-163)||(58149-58271)
scaffold0006 (45-147)||(219709-219811)
scaffold0006 (32-147)||(169128-169243)
scaffold0006 (41-155)||(145988-146102)
[»] chr8 (2 HSPs)
chr8 (41-155)||(20813401-20813515)
chr8 (43-175)||(20792863-20792995)
[»] scaffold0460 (1 HSPs)
scaffold0460 (44-175)||(9247-9378)
[»] scaffold0068 (1 HSPs)
scaffold0068 (41-162)||(39763-39884)
[»] chr6 (2 HSPs)
chr6 (41-155)||(21815465-21815579)
chr6 (45-148)||(22283056-22283159)
[»] scaffold0069 (2 HSPs)
scaffold0069 (20-147)||(27466-27593)
scaffold0069 (20-147)||(31581-31708)
[»] scaffold0012 (2 HSPs)
scaffold0012 (72-155)||(108990-109073)
scaffold0012 (45-147)||(116724-116826)
[»] scaffold0783 (1 HSPs)
scaffold0783 (45-147)||(504-606)
[»] chr2 (2 HSPs)
chr2 (20-147)||(38056855-38056982)
chr2 (41-117)||(30704244-30704320)


Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 15898141 - 15898371
Alignment:
Q  18 agtcaagcctacacaggtcaatctgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaag 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15898141 agtcaagcctacacaggtcaatctgctaaagagggcacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaag 15898240  T
Q  118 tttggaatcacctaaaaaatatttaaacaacaatgtaacagaattacacattttattactttgtgaaactttagtactcnnnnnnnnnnnnnnnnttgca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||    
T  15898241 tttggaatcacctaaaaaatatttaaacaacaatgtaacagaattacacattttattactttgtgaaactttagtactc---caaaaaaacaaaattgca 15898337  T
Q  218 tttttaatttagaaatcacaaataaatatttttt 251  Q
    ||||||||||||||||||||||||||||||||||    
T  15898338 tttttaatttagaaatcacaaataaatatttttt 15898371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 13651809 - 13651675
Alignment:
Q  41 tgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatt 140  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||| |||||    
T  13651809 tgctaaagagggcacttgagttttgagtttgcaatatcatgtcagcatctgcctgtaccatcctcaacagctccaagtttggaatcacctaaaacatatt 13651710  T
Q  141 taaacaacaatgtaacagaattacacattttatta 175  Q
    ||||||||||||||| ||||||| |||||||||||    
T  13651709 taaacaacaatgtaagagaattaaacattttatta 13651675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 13508320 - 13508177
Alignment:
Q  32 aggtcaatctgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcaccta 131  Q
    |||||| | ||| |||||||| |||||||||||||||||||||||||||||||||||  |||||| |||||||||||  |||||||||||||||||||||    
T  13508320 aggtcattttgcaaaagagggaacttgagttttgggtttgcaatatcatgtcagcatccgcctgtaccatcctcaacagctccaagtttggaatcaccta 13508221  T
Q  132 aaaaatatttaaacaacaatgtaacagaattacacattttatta 175  Q
    ||| |||||||||||||||||||| ||||||| |||||||||||    
T  13508220 aaacatatttaaacaacaatgtaagagaattaaacattttatta 13508177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 13515508 - 13515365
Alignment:
Q  32 aggtcaatctgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcaccta 131  Q
    |||||| | ||| |||||||| |||||||||||||||||||||||||||||||||||  |||||| |||||||||||  |||||||||||||||||||||    
T  13515508 aggtcattttgcaaaagagggaacttgagttttgggtttgcaatatcatgtcagcatccgcctgtaccatcctcaacagctccaagtttggaatcaccta 13515409  T
Q  132 aaaaatatttaaacaacaatgtaacagaattacacattttatta 175  Q
    ||| |||||||||||||||||||| ||||||| |||||||||||    
T  13515408 aaacatatttaaacaacaatgtaagagaattaaacattttatta 13515365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 13686558 - 13686415
Alignment:
Q  32 aggtcaatctgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcaccta 131  Q
    |||||| | ||| |||||||| |||||||||||||||||||||||||||||||||||  |||||| |||||||||||  |||||||||||||||||||||    
T  13686558 aggtcattttgcaaaagagggaacttgagttttgggtttgcaatatcatgtcagcatccgcctgtaccatcctcaacagctccaagtttggaatcaccta 13686459  T
Q  132 aaaaatatttaaacaacaatgtaacagaattacacattttatta 175  Q
    ||| |||||||||||||||||||| ||||||| |||||||||||    
T  13686458 aaacatatttaaacaacaatgtaagagaattaaacattttatta 13686415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 19136609 - 19136752
Alignment:
Q  32 aggtcaatctgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcaccta 131  Q
    |||||| | ||| |||||||| |||||||||||||||||||||||||||||||||||  |||||| |||||||||||  |||||||||||||||||||||    
T  19136609 aggtcattttgcaaaagagggaacttgagttttgggtttgcaatatcatgtcagcatccgcctgtaccatcctcaacagctccaagtttggaatcaccta 19136708  T
Q  132 aaaaatatttaaacaacaatgtaacagaattacacattttatta 175  Q
    ||| |||||||||||||||||||| ||||||| |||||||||||    
T  19136709 aaacatatttaaacaacaatgtaagagaattaaacattttatta 19136752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 20488389 - 20488258
Alignment:
Q  44 taaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatttaa 143  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  20488389 taaagagggaacttgagttttgagtttgcaatatcatgtcagcatccgcctgttccatcctcaacaactccaagtttggaatcacctaaaacatatttaa 20488290  T
Q  144 acaacaatgtaacagaattacacattttatta 175  Q
    |||||||||||| ||||||| |||| ||||||    
T  20488289 acaacaatgtaaaagaattaaacatgttatta 20488258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 13612102 - 13611972
Alignment:
Q  45 aaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatttaaa 144  Q
    |||||||| |||||||||||||||||||||||||||||||||||  |||||| |||||||||||  |||||||||||||||||||||||| |||||||||    
T  13612102 aaagagggaacttgagttttgggtttgcaatatcatgtcagcatccgcctgtaccatcctcaacagctccaagtttggaatcacctaaaacatatttaaa 13612003  T
Q  145 caacaatgtaacagaattacacattttatta 175  Q
    ||||||||||  ||||||| |||||||||||    
T  13612002 caacaatgtacgagaattaaacattttatta 13611972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 13422447 - 13422318
Alignment:
Q  43 ctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatattta 142  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||| ||| ||| |||||||||||  ||||||||||||||||||||| || |||||||    
T  13422447 ctaaagagggcacttgaattttgggtttgaaatatcatgtcagcatctgcgtgtaccatcctcaacagctccaagtttggaatcacctataacatattta 13422348  T
Q  143 aacaacaatgtaacagaattacacatttta 172  Q
    ||||||||||||| ||||||| ||||||||    
T  13422347 aacaacaatgtaaaagaattaaacatttta 13422318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 13544679 - 13544557
Alignment:
Q  41 tgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatt 140  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||  |||||| ||||| ||||   |||||||||||||||||||||||  |||||    
T  13544679 tgctaaagagggcacttgagttttgggtttgcaatatcatgtcagcatccgcctgtgccatcttcaaagtctccaagtttggaatcacctaaatcatatt 13544580  T
Q  141 taaacaacaatgtaacagaatta 163  Q
    ||||||||||||||| |||||||    
T  13544579 taaacaacaatgtaaaagaatta 13544557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 20478580 - 20478478
Alignment:
Q  45 aaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatttaaa 144  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||  ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  20478580 aaagagggcacttgtgttttgggtttgcaatagcatgtcagcatccgcctggtccatcctcaacttctccaagtttggaatcacctaaaacatatttaaa 20478481  T
Q  145 caa 147  Q
    |||    
T  20478480 caa 20478478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 20369498 - 20369405
Alignment:
Q  54 acttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatttaaacaa 147  Q
    ||||| ||||||||||||||||| |||||||||||  ||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  20369498 acttgtgttttgggtttgcaatagcatgtcagcatccgcctgttccatcctcaacatctccaagtttggaatcacctaaaacatatttaaacaa 20369405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 13671629 - 13671514
Alignment:
Q  32 aggtcaatctgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcaccta 131  Q
    |||||| | ||| |||||||| || ||||||||  |||||||||| |||||||||||  |||||||||||||||||   |||||||||||||||||||||    
T  13671629 aggtcattttgcaaaagagggcacatgagtttttagtttgcaatagcatgtcagcatccgcctgttccatcctcaaaaactccaagtttggaatcaccta 13671530  T
Q  132 aaaaatatttaaacaa 147  Q
    ||| ||||||||||||    
T  13671529 aaacatatttaaacaa 13671514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 13588804 - 13588718
Alignment:
Q  61 ttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatttaaacaa 147  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||   |||||||||||||||||||||||| ||||||||||||    
T  13588804 ttttgggtttgcaatagcatgtcagcatccgcctgttccatcctcaaaaactccaagtttggaatcacctaaaacatatttaaacaa 13588718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 13656341 - 13656227
Alignment:
Q  41 tgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatt 140  Q
    |||||| ||||| |||||||||||| | ||||||||||| ||||||||  | ||||| ||||||||||   ||||||||||||||||||||||| |||||    
T  13656341 tgctaaggagggcacttgagttttgagattgcaatatcacgtcagcatccgtctgttgcatcctcaacatttccaagtttggaatcacctaaaacatatt 13656242  T
Q  141 taaacaacaatgtaa 155  Q
    | |||||||||||||    
T  13656241 tgaacaacaatgtaa 13656227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 16467060 - 16467106
Alignment:
Q  105 caactcctccaagtttggaatcacctaaaaaatatttaaacaacaat 151  Q
    |||||||| ||||||||||||||||||||| ||||||| ||| ||||    
T  16467060 caactccttcaagtttggaatcacctaaaacatatttatacaccaat 16467106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 110982 - 110848
Alignment:
Q  41 tgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatt 140  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  110982 tgctaaagagggaacttgagttttgagtttgcaatatcatgtcagcatccgcctgtcccatcctcaacgcctccaagtttggaatcacctaaaacatatt 110883  T
Q  141 taaacaacaatgtaacagaattacacattttatta 175  Q
    ||||||||||||||| ||||||| |||||||||||    
T  110882 taaacaacaatgtaaaagaattaaacattttatta 110848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 141570 - 141436
Alignment:
Q  41 tgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatt 140  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||| |||||    
T  141570 tgctaaagagggcacttgagttttgagtttgcaatatcatgtcagcatctgcctgtaccatcctcaacagctccaagtttggaatcacctaaaacatatt 141471  T
Q  141 taaacaacaatgtaacagaattacacattttatta 175  Q
    ||||||||||||||| ||||||| |||||||||||    
T  141470 taaacaacaatgtaagagaattaaacattttatta 141436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 58271 - 58149
Alignment:
Q  41 tgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatt 140  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||  ||| ||  |||| |||||  |||||||||||||||||||||||  |||||    
T  58271 tgctaaagagggcacttgagttttgggtttgcaatatcatgtcagcatccgcccgtggcatcttcaacatctccaagtttggaatcacctaaattatatt 58172  T
Q  141 taaacaacaatgtaacagaatta 163  Q
    |||||| |||||||| |||||||    
T  58171 taaacagcaatgtaaaagaatta 58149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 219811 - 219709
Alignment:
Q  45 aaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatttaaa 144  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||  |||||||||||||||||   |||||||||||||||||||||||| |||||||||    
T  219811 aaagagggcacttgtgttttgggtttgcaatagcatgtcagcatccgcctgttccatcctcaaaaactccaagtttggaatcacctaaaacatatttaaa 219712  T
Q  145 caa 147  Q
    |||    
T  219711 caa 219709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 169243 - 169128
Alignment:
Q  32 aggtcaatctgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcaccta 131  Q
    |||||| | ||| |||||||| || ||||||||  |||||||||| |||||||||||  |||||||||||||||||   |||||||||||||||||||||    
T  169243 aggtcattttgcaaaagagggcacatgagtttttagtttgcaatagcatgtcagcatccgcctgttccatcctcaaaaactccaagtttggaatcaccta 169144  T
Q  132 aaaaatatttaaacaa 147  Q
    ||| ||||||||||||    
T  169143 aaacatatttaaacaa 169128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 146102 - 145988
Alignment:
Q  41 tgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatt 140  Q
    |||||| ||||| |||||||||||| | ||||||||||| ||||||||  | ||||| ||||||||||   ||||||||||||||||||||||| |||||    
T  146102 tgctaaggagggcacttgagttttgagattgcaatatcacgtcagcatccgtctgttgcatcctcaacatttccaagtttggaatcacctaaaacatatt 146003  T
Q  141 taaacaacaatgtaa 155  Q
    | |||||||||||||    
T  146002 tgaacaacaatgtaa 145988  T

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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 20813401 - 20813515
Alignment:
Q  41 tgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatt 140  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20813401 tgctaaagagggaacttgggttttgggttttcaatatcatgtcagcatccgcctgttccatcctcaactcctccaagtttggaatcacctaaaacatatt 20813500  T
Q  141 taaacaacaatgtaa 155  Q
    |||||||||||||||    
T  20813501 taaacaacaatgtaa 20813515  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 20792863 - 20792995
Alignment:
Q  43 ctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatattta 142  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||  |||||| ||||| ||||| ||||||||||||||||||||||||| |||||||    
T  20792863 ctaaagagggaatttgagttttgggtttgcaatatcaagtcagcatcagcctgtgccatcttcaacacctccaagtttggaatcacctaaaacatattta 20792962  T
Q  143 aacaacaatgtaacagaattacacattttatta 175  Q
    ||||||||||||| |||| || |||||||||||    
T  20792963 aacaacaatgtaaaagaactaaacattttatta 20792995  T

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Target: scaffold0460 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 9378 - 9247
Alignment:
Q  44 taaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatttaa 143  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||  |||||||||||| |||||| |||||||||||||||||||||||| ||||||||    
T  9378 taaagagggaacttgagttttgagtttgcaatatcatgtaagcatccgcctgttccatcgtcaacttctccaagtttggaatcacctaaaacatatttaa 9279  T
Q  144 acaacaatgtaacagaattacacattttatta 175  Q
    |||||||||||| ||||||| |||| ||||||    
T  9278 acaacaatgtaaaagaattaaacatgttatta 9247  T

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Target: scaffold0068 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 39763 - 39884
Alignment:
Q  41 tgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatt 140  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||  |||||| ||||||||||   |||||||||||||||||||||||  |||||    
T  39763 tgctaaagagggcacttgagttttgggtttgcaatatcatgtcagcatccgcctgtgccatcctcaatatctccaagtttggaatcacctaaatcatatt 39862  T
Q  141 taaacaacaatgtaacagaatt 162  Q
    ||||||||||||||| ||||||    
T  39863 taaacaacaatgtaaaagaatt 39884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 21815579 - 21815465
Alignment:
Q  41 tgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatt 140  Q
    |||||||||||| ||||| ||| ||||||| ||||||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||| |||||    
T  21815579 tgctaaagagggaacttgggttctgggttttcaatatcatgtcagcatctgcctgtaccatcctcaacaactccaagtttggaatcacctaaaacatatt 21815480  T
Q  141 taaacaacaatgtaa 155  Q
    |||||||||||||||    
T  21815479 taaacaacaatgtaa 21815465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 148
Target Start/End: Original strand, 22283056 - 22283159
Alignment:
Q  45 aaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatttaaa 144  Q
    |||||||| ||||||||||||| ||||||||||||||||||||| ||||||| | ||| |||||||||| | ||||||||||||||| || |||||||||    
T  22283056 aaagagggaacttgagttttggatttgcaatatcatgtcagcatctgcctgtacgatcttcaactcctctatgtttggaatcacctataacatatttaaa 22283155  T
Q  145 caac 148  Q
    ||||    
T  22283156 caac 22283159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 27593 - 27466
Alignment:
Q  20 tcaagcctacacaggtcaatctgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtt 119  Q
    ||||||| | ||| |||| | ||| |||||||| |||||||||||||||||||||||||||||||||||  |||||| |||||||||||  |||||||||    
T  27593 tcaagccaatacatgtcattttgcaaaagagggcacttgagttttgggtttgcaatatcatgtcagcatccgcctgtaccatcctcaacatctccaagtt 27494  T
Q  120 tggaatcacctaaaaaatatttaaacaa 147  Q
    || |||||||||||| ||||||||||||    
T  27493 tgaaatcacctaaaatatatttaaacaa 27466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 31708 - 31581
Alignment:
Q  20 tcaagcctacacaggtcaatctgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtt 119  Q
    ||||||| | ||| |||| | ||| |||||||| |||||||||||||||||||||||||||||||||||  |||||| |||||||||||  |||||||||    
T  31708 tcaagccaatacatgtcattttgcaaaagagggcacttgagttttgggtttgcaatatcatgtcagcatccgcctgtaccatcctcaacatctccaagtt 31609  T
Q  120 tggaatcacctaaaaaatatttaaacaa 147  Q
    || |||||||||||| ||||||||||||    
T  31608 tgaaatcacctaaaatatatttaaacaa 31581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 72 - 155
Target Start/End: Complemental strand, 109073 - 108990
Alignment:
Q  72 caatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatttaaacaacaatgtaa 155  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  109073 caatatcatgtcagcatccgcctgttccatcctcaactcctccaagtttggaatcacctaaaacatatttaaacaacaatgtaa 108990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 116826 - 116724
Alignment:
Q  45 aaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatttaaa 144  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||  |||||||||||||||||   |||||||||||||||||||||||| |||||||||    
T  116826 aaagagggcacttgtgttttgggtttgcaatagcatgtcagcatccgcctgttccatcctcaaaaactccaagtttggaatcacctaaaacatatttaaa 116727  T
Q  145 caa 147  Q
    |||    
T  116726 caa 116724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0783 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0783
Description:

Target: scaffold0783; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 606 - 504
Alignment:
Q  45 aaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtttggaatcacctaaaaaatatttaaa 144  Q
    |||||||| ||||| ||||||||||||||||| |||||||||||  |||||||||||||||||   |||||||||||||||||||||||| |||||||||    
T  606 aaagagggcacttgtgttttgggtttgcaatagcatgtcagcatccgcctgttccatcctcaaaaactccaagtttggaatcacctaaaacatatttaaa 507  T
Q  145 caa 147  Q
    |||    
T  506 caa 504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 38056855 - 38056982
Alignment:
Q  20 tcaagcctacacaggtcaatctgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaagtt 119  Q
    ||||||| | ||| |||| | |||||||||||  |||||||||||||||||||||||||||||| |||| | ||||| ||||| |||||  |||||||||    
T  38056855 tcaagccaatacatgtcattttgctaaagaggacacttgagttttgggtttgcaatatcatgtcggcatcttcctgtaccatcatcaacaactccaagtt 38056954  T
Q  120 tggaatcacctaaaaaatatttaaacaa 147  Q
    ||||||||||||||  ||||||||||||    
T  38056955 tggaatcacctaaatcatatttaaacaa 38056982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 30704244 - 30704320
Alignment:
Q  41 tgctaaagagggtacttgagttttgggtttgcaatatcatgtcagcatttgcctgttccatcctcaactcctccaag 117  Q
    |||||||||  | ||||| |||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||||    
T  30704244 tgctaaagacagcacttgcgttttgggtttgcaatatcatgtcagcatccgcctgtaccatcttcaactcctccaag 30704320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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