View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1898_low_23 (Length: 242)

Name: NF1898_low_23
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1898_low_23
NF1898_low_23
[»] chr1 (16 HSPs)
chr1 (4-230)||(15898473-15898699)
chr1 (69-230)||(13421436-13421597)
chr1 (73-230)||(13685362-13685519)
chr1 (73-230)||(19137649-19137806)
chr1 (72-230)||(13543956-13544114)
chr1 (73-230)||(13610918-13611075)
chr1 (74-230)||(13506850-13507006)
chr1 (74-230)||(13514032-13514188)
chr1 (48-144)||(13655786-13655881)
chr1 (79-230)||(13650640-13650791)
chr1 (70-216)||(13671130-13671276)
chr1 (70-186)||(13588359-13588475)
chr1 (70-186)||(20369055-20369171)
chr1 (70-185)||(20478129-20478244)
chr1 (2-44)||(13588512-13588554)
chr1 (2-44)||(13671313-13671355)
[»] chr2 (1 HSPs)
chr2 (73-216)||(38057188-38057331)
[»] scaffold0006 (8 HSPs)
scaffold0006 (79-230)||(140401-140552)
scaffold0006 (72-182)||(57594-57704)
scaffold0006 (71-230)||(110481-110640)
scaffold0006 (48-144)||(145547-145642)
scaffold0006 (70-216)||(168744-168890)
scaffold0006 (70-186)||(219365-219481)
scaffold0006 (2-44)||(168927-168969)
scaffold0006 (2-44)||(219518-219560)
[»] scaffold0068 (1 HSPs)
scaffold0068 (72-216)||(40334-40478)
[»] chr6 (2 HSPs)
chr6 (63-186)||(22283385-22283508)
chr6 (69-125)||(21815092-21815148)
[»] scaffold0069 (2 HSPs)
scaffold0069 (70-186)||(27154-27270)
scaffold0069 (70-186)||(31269-31385)
[»] scaffold0012 (2 HSPs)
scaffold0012 (70-186)||(116374-116490)
scaffold0012 (68-144)||(108587-108663)
[»] scaffold0783 (1 HSPs)
scaffold0783 (70-185)||(178-293)
[»] chr8 (1 HSPs)
chr8 (68-144)||(20814159-20814235)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 15898473 - 15898699
Alignment:
Q  4 tgtttgatatttcaaatgaataacactaatcccttactgtaaaaattatgatatttaaaatttatatgatatgcatacctcttcggcaatgaaaagtggt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15898473 tgtttgatatttcaaatgaataacactaatcccttactgtaaaaattatgatatttaaaatttatatgatatgcatacctcttcggcaatgaaaagtggt 15898572  T
Q  104 tgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaacaaattcaaatttgtacaaccagtaacattaattt 203  Q
    |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15898573 tgctttgttgaaaccgattgttcttcatctcgaaaattggagttttttgtagacagagttctgaacaaattcaaatttatacaaccagtaacattaattt 15898672  T
Q  204 tcctcaaagatgggcatgctagagtat 230  Q
    |||||||||||||||||||||||||||    
T  15898673 tcctcaaagatgggcatgctagagtat 15898699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 13421597 - 13421436
Alignment:
Q  69 atgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaa 168  Q
    |||||||||||||||||||||||| |||||||||||| |   || |||  ||||||   |||||||||||||||||| || | ||||| || ||||||||    
T  13421597 atgatatgcatacctcttcggcaacgaaaagtggttgttgcattaaaagagagtgtctgtcatctcgaaaattggagcttgttgtagatagtgttctgaa 13421498  T
Q  169 caaattcaaatttgtacaaccagtaacattaattttcctcaaagatgggcatgctagagtat 230  Q
    ||| ||||| |||||||| |  | ||||||||| ||||||||||||||||||||||||||||    
T  13421497 caatttcaactttgtacatctggaaacattaatattcctcaaagatgggcatgctagagtat 13421436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 13685519 - 13685362
Alignment:
Q  73 tatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaacaaa 172  Q
    ||||| ||||||||||||||||||||||||| | |  ||| |||| ||| |||  |||||||||||||||||| || | ||||| || |||||||||||     
T  13685519 tatgcgtacctcttcggcaatgaaaagtggtggttgcgttaaaacagagggtttgtcatctcgaaaattggagcttcttgtagatagtgttctgaacaat 13685420  T
Q  173 ttcaaatttgtacaaccagtaacattaattttcctcaaagatgggcatgctagagtat 230  Q
    |||||||||||||| | ||  ||||| ||||| |||||||||||||||||||||||||    
T  13685419 ttcaaatttgtacatctagagacattgatttttctcaaagatgggcatgctagagtat 13685362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 230
Target Start/End: Original strand, 19137649 - 19137806
Alignment:
Q  73 tatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaacaaa 172  Q
    ||||| ||||||||||||||||||||||||| | |  ||| |||| ||| |||  |||||||||||||||||| || | ||||| || |||||||||||     
T  19137649 tatgcgtacctcttcggcaatgaaaagtggtggttgcgttaaaacagagggtttgtcatctcgaaaattggagcttcttgtagatagtgttctgaacaat 19137748  T
Q  173 ttcaaatttgtacaaccagtaacattaattttcctcaaagatgggcatgctagagtat 230  Q
    ||||| |||||||| | ||  ||||| ||||| |||||||||||||||||||||||||    
T  19137749 ttcaactttgtacatctagagacattgatttttctcaaagatgggcatgctagagtat 19137806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 230
Target Start/End: Complemental strand, 13544114 - 13543956
Alignment:
Q  72 atatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaacaa 171  Q
    |||||||||||||||| ||||||||||||||||| || |||||||| ||| |||  |||||| ||||||| |||| ||| ||||| | ||||||||||||    
T  13544114 atatgcatacctcttcagcaatgaaaagtggttgtttagttgaaacagagagtttatcatcttgaaaatttgagtattttgtagatatagttctgaacaa 13544015  T
Q  172 attcaaatttgtacaaccagtaacattaattttcctcaaagatgggcatgctagagtat 230  Q
    |||||| ||||  ||    |||||| ||||||||||||||||||| |||  ||||||||    
T  13544014 attcaactttgcgcatttggtaacactaattttcctcaaagatggacatagtagagtat 13543956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 13611075 - 13610918
Alignment:
Q  73 tatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaacaaa 172  Q
    ||||| ||||||||||||||||||||||||| | |  |||  ||| ||| |||  |||||||||||||||||| || | ||||| || |||||||||||     
T  13611075 tatgcgtacctcttcggcaatgaaaagtggtggttgcgttataacagagggtttgtcatctcgaaaattggagcttcttgtagatagtgttctgaacaat 13610976  T
Q  173 ttcaaatttgtacaaccagtaacattaattttcctcaaagatgggcatgctagagtat 230  Q
    ||||| |||||||| | ||  ||||| ||||| |||||||||||||||||||||||||    
T  13610975 ttcaattttgtacatctagagacattgatttttctcaaagatgggcatgctagagtat 13610918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 13507006 - 13506850
Alignment:
Q  74 atgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaacaaat 173  Q
    |||| ||||||||| ||||||||||||||| | |  ||| |||| ||| |||  |||||||||||||||||| || | ||||| || ||||||||||| |    
T  13507006 atgcgtacctcttcagcaatgaaaagtggtggttgcgttaaaacagagggtttgtcatctcgaaaattggagcttcttgtagatagtgttctgaacaatt 13506907  T
Q  174 tcaaatttgtacaaccagtaacattaattttcctcaaagatgggcatgctagagtat 230  Q
    |||| |||||||| | ||  ||||| ||||| |||||||||||||||||||||||||    
T  13506906 tcaactttgtacatctagagacattgatttttctcaaagatgggcatgctagagtat 13506850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 13514188 - 13514032
Alignment:
Q  74 atgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaacaaat 173  Q
    |||| ||||||||| ||||||||||||||| | |  ||| |||| ||| |||  |||||||||||||||||| || | ||||| || ||||||||||| |    
T  13514188 atgcgtacctcttcagcaatgaaaagtggtggttgcgttaaaacagagggtttgtcatctcgaaaattggagcttcttgtagatagtgttctgaacaatt 13514089  T
Q  174 tcaaatttgtacaaccagtaacattaattttcctcaaagatgggcatgctagagtat 230  Q
    |||| |||||||| | ||  ||||| ||||| |||||||||||||||||||||||||    
T  13514088 tcaactttgtacatctagagacattgatttttctcaaagatgggcatgctagagtat 13514032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 13655881 - 13655786
Alignment:
Q  48 attatgatatttaaaatttatatgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattgga 144  Q
    |||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||| || |||||||| |||||||  |||||| ||||||||||    
T  13655881 attatgatatataaa-tttatatgatatgcatacctgttcggcaataaaaagtggttgtttcgttgaaacagagtgtttgtcatcttgaaaattgga 13655786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 13650791 - 13650640
Alignment:
Q  79 tacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaacaaattcaaa 178  Q
    ||||||||||||||||||||||||| | |  ||| |||| ||| |||  |||||||||||||||||| || | ||||| || ||||||||||| |||||     
T  13650791 tacctcttcggcaatgaaaagtggtggttgcgttaaaacagagggtttgtcatctcgaaaattggagcttcttgtagatagtgttctgaacaatttcaac 13650692  T
Q  179 tttgtacaaccagtaacattaattttcctcaaagatgggcatgctagagtat 230  Q
    |||||||| | ||  ||||||||||  ||||| ||||| ||| |||||||||    
T  13650691 tttgtacatctagagacattaatttctctcaatgatggacattctagagtat 13650640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 216
Target Start/End: Complemental strand, 13671276 - 13671130
Alignment:
Q  70 tgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaac 169  Q
    |||||||||||||||||| ||||||||||||||||| |   || |||| |||||||  ||||||| |||||||||| || | |||||  ||||||| |||    
T  13671276 tgatatgcatacctcttcagcaatgaaaagtggttgttgctttaaaacagagtgtttgtcatctccaaaattggagcttcttgtagaatgagttctaaac 13671177  T
Q  170 aaattcaaatttgtacaaccagtaacattaattttcctcaaagatgg 216  Q
    |||||||| |||||||||     ||||| || |||||||||||||||    
T  13671176 aaattcaactttgtacaattgtaaacatcaactttcctcaaagatgg 13671130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 13588475 - 13588359
Alignment:
Q  70 tgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaac 169  Q
    |||||||||||||||||| ||||||||||||||||| |   || |||| |||||||  ||||||| |||||||||| || | |||||  ||||||| |||    
T  13588475 tgatatgcatacctcttcagcaatgaaaagtggttgttgctttaaaacagagtgtttgtcatctccaaaattggagcttcttgtagaatgagttctaaac 13588376  T
Q  170 aaattcaaatttgtaca 186  Q
    |||||||| ||||||||    
T  13588375 aaattcaactttgtaca 13588359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 20369171 - 20369055
Alignment:
Q  70 tgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaac 169  Q
    |||||||||||||||||| ||||||||||||||||| |   || |||| |||||||  |||||| ||||||||||| || | |||||  ||||||| |||    
T  20369171 tgatatgcatacctcttcagcaatgaaaagtggttgttgctttaaaacagagtgtttgtcatcttgaaaattggagcttcttgtagaatgagttctaaac 20369072  T
Q  170 aaattcaaatttgtaca 186  Q
    |||||||| ||||||||    
T  20369071 aaattcaactttgtaca 20369055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 20478244 - 20478129
Alignment:
Q  70 tgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaac 169  Q
    |||||||||||||||||| ||||||||||||||||| |   || |||| |||||||  |||||| ||||||||||| || | |||||  ||||||| |||    
T  20478244 tgatatgcatacctcttcagcaatgaaaagtggttgttgctttaaaacagagtgtttgtcatcttgaaaattggagcttcttgtagaatgagttctaaac 20478145  T
Q  170 aaattcaaatttgtac 185  Q
    |||||||| |||||||    
T  20478144 aaattcaactttgtac 20478129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 13588554 - 13588512
Alignment:
Q  2 attgtttgatatttcaaatgaataacactaatcccttactgta 44  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||    
T  13588554 attgtttggtatttcaaaagaataacactaattccttactgta 13588512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 13671355 - 13671313
Alignment:
Q  2 attgtttgatatttcaaatgaataacactaatcccttactgta 44  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||    
T  13671355 attgtttggtatttcaaaagaataacactaattccttactgta 13671313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 38057188 - 38057331
Alignment:
Q  73 tatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaacaaa 172  Q
    ||||||||||||||||||||||||||||||||| || |||||||| |||||||  |||||| ||||||| || ||||| ||||| |||||||||||||||    
T  38057188 tatgcatacctcttcggcaatgaaaagtggttgtttcgttgaaacagagtgtttatcatcttgaaaatttgacttttttgtagatagagttctgaacaaa 38057287  T
Q  173 ttcaaatttgtacaaccagtaacattaattttcctcaaagatgg 216  Q
    ||||| ||||||||| | | ||||| |||||| |||||| ||||    
T  38057288 ttcaactttgtacaatcggcaacatgaattttactcaaacatgg 38057331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 140552 - 140401
Alignment:
Q  79 tacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaacaaattcaaa 178  Q
    ||||||||||||||||||||||||| | |  ||| |||| ||| |||  |||||||||||||||||| || | ||||| || ||||||||||| |||||     
T  140552 tacctcttcggcaatgaaaagtggtggttgcgttaaaacagagggtttgtcatctcgaaaattggagcttcttgtagatagtgttctgaacaatttcaac 140453  T
Q  179 tttgtacaaccagtaacattaattttcctcaaagatgggcatgctagagtat 230  Q
    |||||||| | ||  ||||| ||||| |||||||||||||||||||||||||    
T  140452 tttgtacatctagagacattgatttttctcaaagatgggcatgctagagtat 140401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 57704 - 57594
Alignment:
Q  72 atatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaacaa 171  Q
    |||||||||||||||| ||||||||||||||||| || |||||||| ||| |||  |||||| ||||||| |||||||| || |||||||||||||||||    
T  57704 atatgcatacctcttcagcaatgaaaagtggttgtttagttgaaacagagagtttatcatcttgaaaatttgagttttttgtcgacagagttctgaacaa 57605  T
Q  172 attcaaatttg 182  Q
    |||||| ||||    
T  57604 attcaactttg 57594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 230
Target Start/End: Complemental strand, 110640 - 110481
Alignment:
Q  71 gatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaaca 170  Q
    ||||||| ||||||||||||||||||||| ||||| || ||| |||| |||||||   ||||||||||||||||| || | ||||| |  ||  ||||||    
T  110640 gatatgcgtacctcttcggcaatgaaaagcggttgtttcgttaaaacagagtgtttgccatctcgaaaattggagcttcttgtagataatgtcgtgaaca 110541  T
Q  171 aattcaaatttgtacaaccagtaacattaattttcctcaaagatgggcatgctagagtat 230  Q
    | ||||| |||||||| | ||  |||||||| ||||||||||||||||| ||||||||||    
T  110540 atttcaactttgtacatctagcgacattaatattcctcaaagatgggcacgctagagtat 110481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 145642 - 145547
Alignment:
Q  48 attatgatatttaaaatttatatgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattgga 144  Q
    |||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||| || |||||||| |||||||  |||||| ||||||||||    
T  145642 attatgatatataaa-tttatatgatatgcatacctgttcggcaataaaaagtggttgtttcgttgaaacagagtgtttgtcatcttgaaaattgga 145547  T

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Target: scaffold0006; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 216
Target Start/End: Complemental strand, 168890 - 168744
Alignment:
Q  70 tgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaac 169  Q
    |||||||||||||||||| ||||||||||||||||| |   || |||| |||||||  ||||||| |||||||||| || | |||||  ||||||| |||    
T  168890 tgatatgcatacctcttcagcaatgaaaagtggttgttgctttaaaacagagtgtttgtcatctccaaaattggagcttcttgtagaatgagttctaaac 168791  T
Q  170 aaattcaaatttgtacaaccagtaacattaattttcctcaaagatgg 216  Q
    |||||||| |||||||||     ||||| || |||||||||||||||    
T  168790 aaattcaactttgtacaattgtaaacatcaactttcctcaaagatgg 168744  T

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Target: scaffold0006; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 219481 - 219365
Alignment:
Q  70 tgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaac 169  Q
    |||||||||||||||||| ||||||||||||||||| |   || |||| |||||||  ||||||| |||||||||| || | || ||  ||||||| |||    
T  219481 tgatatgcatacctcttcagcaatgaaaagtggttgttgctttaaaacagagtgtttgtcatctccaaaattggagcttcttgtcgaatgagttctaaac 219382  T
Q  170 aaattcaaatttgtaca 186  Q
    |||||||| ||||||||    
T  219381 aaattcaactttgtaca 219365  T

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Target: scaffold0006; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 168969 - 168927
Alignment:
Q  2 attgtttgatatttcaaatgaataacactaatcccttactgta 44  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||    
T  168969 attgtttggtatttcaaaagaataacactaattccttactgta 168927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 219560 - 219518
Alignment:
Q  2 attgtttgatatttcaaatgaataacactaatcccttactgta 44  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||    
T  219560 attgtttggtatttcaaaagaataacactaattccttactgta 219518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 40334 - 40478
Alignment:
Q  72 atatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaacaa 171  Q
    |||||||||||||||| ||||||||||||||||| || |||||||| ||| |||  |||||| ||||| | |||||||| ||||| ||||||||||||||    
T  40334 atatgcatacctcttcagcaatgaaaagtggttgtttagttgaaacagagagtttatcatcttgaaaaattgagttttttgtagatagagttctgaacaa 40433  T
Q  172 attcaaatttgtacaaccagtaacattaattttcctcaaagatgg 216  Q
    |||||| ||||  ||    |||||| ||| |||||||||||||||    
T  40434 attcaactttgcgcatttggtaacactaaatttcctcaaagatgg 40478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 186
Target Start/End: Original strand, 22283385 - 22283508
Alignment:
Q  63 atttatatgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagt 162  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||  ||  |||  |||||||  |||||| ||||||||||| || | ||||| |||||    
T  22283385 atttacatgatatgcatacctcttcagcaatgaaaagtggttgctgcgtcaaaatagagtgtttgtcatcttgaaaattggagcttcttgtagatagagt 22283484  T
Q  163 tctgaacaaattcaaatttgtaca 186  Q
    ||||||||||||||| ||||||||    
T  22283485 tctgaacaaattcaactttgtaca 22283508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 21815148 - 21815092
Alignment:
Q  69 atgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgtt 125  Q
    ||||||||||||||||||| |||||||||||||||||||  |||||||| |||||||    
T  21815148 atgatatgcatacctcttcagcaatgaaaagtggttgctccgttgaaacagagtgtt 21815092  T

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Target: scaffold0069 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 27270 - 27154
Alignment:
Q  70 tgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaac 169  Q
    |||||||||||||||||| ||||||||||||||||| |   || |||| |||||||  |||||| ||||||||||| || | |||||  ||||||| |||    
T  27270 tgatatgcatacctcttcagcaatgaaaagtggttgttgctttaaaacagagtgtttgtcatcttgaaaattggagcttcttgtagaatgagttctaaac 27171  T
Q  170 aaattcaaatttgtaca 186  Q
    |||||||| ||||||||    
T  27170 aaattcaactttgtaca 27154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 31385 - 31269
Alignment:
Q  70 tgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaac 169  Q
    |||||||||||||||||| ||||||||||||||||| |   || |||| |||||||  |||||| ||||||||||| || | |||||  ||||||| |||    
T  31385 tgatatgcatacctcttcagcaatgaaaagtggttgttgctttaaaacagagtgtttgtcatcttgaaaattggagcttcttgtagaatgagttctaaac 31286  T
Q  170 aaattcaaatttgtaca 186  Q
    |||||||| ||||||||    
T  31285 aaattcaactttgtaca 31269  T

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Target: scaffold0012 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 116490 - 116374
Alignment:
Q  70 tgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaac 169  Q
    |||||||||||||||||| ||||||||||||||||| |   || |||| |||||||  |||||| ||||||||||| || | |||||  ||||||| |||    
T  116490 tgatatgcatacctcttcagcaatgaaaagtggttgttgctttaaaacagagtgtttgtcatcttgaaaattggagcttcttgtagaatgagttctaaac 116391  T
Q  170 aaattcaaatttgtaca 186  Q
    |||||||| ||||||||    
T  116390 aaattcaactttgtaca 116374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 108663 - 108587
Alignment:
Q  68 tatgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattgga 144  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||||| |||||||  |||||  ||||||||||    
T  108663 tatgatatgcatacctcttcagcaatgaaaagtggttgctccgttgaaacagagtgtttgtcatcatgaaaattgga 108587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0783 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0783
Description:

Target: scaffold0783; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 293 - 178
Alignment:
Q  70 tgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattggagtttttcgtagacagagttctgaac 169  Q
    |||||||||||||||||| ||||||||||||||||| |   || |||| |||||||  |||||| ||||||||||| || | |||||  ||||||| |||    
T  293 tgatatgcatacctcttcagcaatgaaaagtggttgttgctttaaaacagagtgtttgtcatcttgaaaattggagcttcttgtagaatgagttctaaac 194  T
Q  170 aaattcaaatttgtac 185  Q
    |||||||| |||||||    
T  193 aaattcaactttgtac 178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 20814159 - 20814235
Alignment:
Q  68 tatgatatgcatacctcttcggcaatgaaaagtggttgctttgttgaaacggagtgttcttcatctcgaaaattgga 144  Q
    ||||||||||||||||||||  ||| ||||||||||||||  |||||||| |||||||  |||||  ||||||||||    
T  20814159 tatgatatgcatacctcttcatcaaagaaaagtggttgctccgttgaaacagagtgtttgtcatcatgaaaattgga 20814235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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