View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_low_26 (Length: 227)
Name: NF1898_low_26
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_low_26 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 44515685 - 44515893
Alignment:
| Q |
22 |
ggaagacaaggtaaacc-ttaaatataacttttaatttatgtctttaattggtgtctgaattcgagggctgtctaggcgatatgaa--cttgaattttca |
118 |
Q |
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| T |
44515685 |
ggaagacaaggtaaaccattaaatataacttttaatttatgtctttaattggtgtctgaatccgagggttgtctaggtgatatgaagacttgaattttca |
44515784 |
T |
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| Q |
119 |
gtgatgttgtcttggtgattctgatctgtttctgtttgagcagaattataggtgtccgtctcttgtttgtgtttactttattttggaggatcttcggatt |
218 |
Q |
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| T |
44515785 |
gtgatgttgtcttagtgattctgatccgtttctgtttgagcagaattataggcgtctgtctcttgtttgtgtttactttattttgggggatcttcggatt |
44515884 |
T |
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| Q |
219 |
ttgttttca |
227 |
Q |
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| T |
44515885 |
ttgttttca |
44515893 |
T |
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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 225
Target Start/End: Original strand, 1917411 - 1917570
Alignment:
| Q |
68 |
attggtgtctgaattcgagggc-tgtctaggcgatatgaa--cttgaattttcagtgatgttgtcttggtgattctgatctgtttctgtttgagcagaat |
164 |
Q |
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| T |
1917411 |
attggtgtctgaatccgagggcatgtctaggcgatatgaagacttgaactttcagcattgttgtcttggtgtttctgatccttgtctgtatgagtagaag |
1917510 |
T |
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| Q |
165 |
tataggtgtccgtctcttgtttgtgtttactttattttggaggatcttcggattttgtttt |
225 |
Q |
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| T |
1917511 |
tacaggtgtccgtctcttgtttgtgtttgctttagtttgg-ggatctttggattttgtttt |
1917570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 225
Target Start/End: Complemental strand, 29121146 - 29120988
Alignment:
| Q |
70 |
tggtgtctgaattcgagggc-tgtctaggcgatatgaa--cttgaattttcagtgatgttgtcttggtgattctgatctgtttctgtttgagcagaatta |
166 |
Q |
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|||||| ||||| ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| | ||||||||||||||| || |
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| T |
29121146 |
tggtgtttgaatccgagggcgtgtctaggcgatatgaagacttgaattttcagcattgttgtcttggtgtttctgatccttgtctgtttgagcagaagta |
29121047 |
T |
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| Q |
167 |
taggtgtccgtctcttgtttgtgtttactttattttggaggatcttcggattttgtttt |
225 |
Q |
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| T |
29121046 |
caggtgtccttcttttgtttgtgtttgctttagtttaagggatctttgaattttgtttt |
29120988 |
T |
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