View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_low_28 (Length: 224)
Name: NF1898_low_28
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 38875486 - 38875289
Alignment:
| Q |
19 |
tttgccttcttatgagttgtgaattttcgacaaatcaggctagctgcattaagctggaatggtggaggttctttcatatttacttcaagcagtgctccat |
118 |
Q |
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| T |
38875486 |
tttgccttcttatgagttgtgaattttcgacaaatcaggctagctgcattaagctggaatggtggaggttctttcatatttacttcaagtagtgctccat |
38875387 |
T |
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| Q |
119 |
atgattgtaatgataatggaccgtgtgatgaggtgggtcatacatccaaattgtcctattattttgtttgttttgatttaaattcgagagatgatgat |
216 |
Q |
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| T |
38875386 |
atgattgtaatgataatggaccgtgtgatgaggtgtgtcatacatccaaattatcctattattttgtttgttttgatttaaattcaagagatgatgat |
38875289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 9821232 - 9821057
Alignment:
| Q |
24 |
cttcttatgagttg---tgaattttcgacaaatcaggctagctgcattaagctggaatggtggaggttctttcatatttacttcaagcagtgctccatat |
120 |
Q |
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| T |
9821232 |
cttcttatgagttgatgtgaattttgaacaaatcaggctagctgcattaagctggaatggtgaaggttctttcgtatttacgtcaagcagtgctccatat |
9821133 |
T |
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| Q |
121 |
gattgtaatgataatggaccgtgtgatgaggtgggtcatacatccaaattgtcctattattttgtttgttttgattt |
197 |
Q |
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| T |
9821132 |
gattgtaatgataacgggccgtgtgatgag-tgcgtcctacatttgaactatcatattattttgcttgttttgattt |
9821057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 38693715 - 38693787
Alignment:
| Q |
144 |
tgatgaggtgggtcatacatccaaattgtcctattattttgtttgttttgatttaaattcgagagatgatgat |
216 |
Q |
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| T |
38693715 |
tgatgaggtgggtcatacatccaaattgtcgtattattttgcttgttttaatttaaattgaagagatgatgat |
38693787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 38693615 - 38693718
Alignment:
| Q |
23 |
ccttcttatgagttg---tgaattttcgacaaatcaggctagctgcattaagctggaatggtggaggttctttcatatttacttcaagcagtgctccata |
119 |
Q |
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||||||||||||||| ||| ||||| | ||| |||| ||||||| |||||||||||||||| ||||||||| |||||| |||||||||||| |||| |
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| T |
38693615 |
ccttcttatgagttgatgtgatttttcaaaaaaccaggttagctgctttaagctggaatggtgaaggttcttttgcatttacgtcaagcagtgcttcata |
38693714 |
T |
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| Q |
120 |
tgat |
123 |
Q |
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|||| |
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| T |
38693715 |
tgat |
38693718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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