View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_low_3 (Length: 497)
Name: NF1898_low_3
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_low_3 |
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| [»] scaffold0530 (1 HSPs) |
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Alignment Details
Target: scaffold0530 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 20 - 487
Target Start/End: Complemental strand, 6441 - 5975
Alignment:
| Q |
20 |
ttcattttgttcagattgctggggaaagtgttaaaatatatgtagcaataactgttagagtggtggaactacttgacaaggtgtacaatatatactttga |
119 |
Q |
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| T |
6441 |
ttcattttgttcagattgctggggaaagtgttaaaatatatgttgcaataactgttagagtggtggaactacttgacaaggtgcacaatgtatactttga |
6342 |
T |
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| Q |
120 |
cttgtgtatatgcatgtatgattgatgtaagaaaatattaactaacttatatcttttgtttcacatagtttttcgagatgaaccgtgatgatgcggttag |
219 |
Q |
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| T |
6341 |
cttgtgtatatgcacgtatgattgatgtaagaaaatattgaccgacgtatattttttgtgtcacatagtttttcgagatgaaccgtgatgatgcggttag |
6242 |
T |
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| Q |
220 |
tgcattgaagatttatagaaaatctggaagtcaggtgatggtgttgagcctttcatgaataaccattttcttattgtgcccttccaactgaagtttgttt |
319 |
Q |
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| T |
6241 |
tgcattgaagatttatagaaaatctggaagtcaggtgatggtgttgagcctttcatgaataaccattttcttattgtgctcttccaactgaagtatgttt |
6142 |
T |
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| Q |
320 |
gttgctgtaggcagagaggttatctcagttctttgagacctgcagggccctagactttggaagggggcataaattcatcaatatcaaacaggtgttacat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6141 |
gttgctgtaggcagagaggttatctcagttctttgagacctgcagggccctagactttggaagggggcataaattcatcaatatcaaacaggtg-tacat |
6043 |
T |
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| Q |
420 |
atatatttccttttattcggcgatgctaaaaatgaatgagactcatgtgcatgtaatttcctcctatg |
487 |
Q |
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| T |
6042 |
atatatttccttttattcggcgatgctaaaaatgaatgagactcatgtgcatgtaatttcctcctatg |
5975 |
T |
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