View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_low_30 (Length: 218)
Name: NF1898_low_30
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 21565216 - 21565037
Alignment:
| Q |
18 |
atgcacgtcatcgcgctctacaaaagatgggtgcggaacaaccaccaggaaatctcttgaacttgagattccaattgctattgctccactccatgaaaat |
117 |
Q |
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| T |
21565216 |
atgcacgtcatcgcgctctacaaaagatgggtgcggaacaaccaccaggaaatctcttgagcttgagattccaattgttattgctccactccatgaaaat |
21565117 |
T |
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| Q |
118 |
gcacgtcatcgtgggctacctcggaaaccaattccaacacagtccatgatgtatgtttcctagttgttgcaatcttctgcgcctttg |
204 |
Q |
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| T |
21565116 |
gcacgtcatcgtgggctacctcggaaaccaattccaacacagtccatgatgtatgtttc-------ttgcaatcttctgcgcctttg |
21565037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 13532832 - 13532707
Alignment:
| Q |
79 |
cttgagattccaattgctattgctccactccatgaaaatgcacgtcatcgtgggctacctcggaaaccaattccaacacagtccatgatgtatgtttcct |
178 |
Q |
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| T |
13532832 |
cttgagattccaatttcaattgctccactccatgaaaatgcacgttatcgtgcgctacctcgaacaccaattccaacacaggccttggtgtatgtttctt |
13532733 |
T |
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| Q |
179 |
agttgttgcaatcttctgcgcctttg |
204 |
Q |
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| T |
13532732 |
agttgctgcagtcttttgcacctttg |
13532707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 19069295 - 19069420
Alignment:
| Q |
79 |
cttgagattccaattgctattgctccactccatgaaaatgcacgtcatcgtgggctacctcggaaaccaattccaacacagtccatgatgtatgtttcct |
178 |
Q |
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| T |
19069295 |
cttgagattccaatttcaattgctccactccatgaaaatgcacgttatcgtgcgctaccttgaacaccaattccaacacaggccttggtgtatgtttctt |
19069394 |
T |
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| Q |
179 |
agttgttgcaatcttctgcgcctttg |
204 |
Q |
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| T |
19069395 |
agttgctgcagtcttttgcgcctttg |
19069420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 19117185 - 19117310
Alignment:
| Q |
79 |
cttgagattccaattgctattgctccactccatgaaaatgcacgtcatcgtgggctacctcggaaaccaattccaacacagtccatgatgtatgtttcct |
178 |
Q |
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| T |
19117185 |
cttgagattccaatttcaattgctccactccatgaaaatgcacgttatcgtgcgctaccttgaacaccaattccaacacaggccttggtgtatgtttctt |
19117284 |
T |
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| Q |
179 |
agttgttgcaatcttctgcgcctttg |
204 |
Q |
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| T |
19117285 |
agttgctgcagtcttttgcgcctttg |
19117310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 34880616 - 34880674
Alignment:
| Q |
18 |
atgcacgtcatcgcgctctacaaaagatgggtgcggaacaaccaccag-gaaatctctt |
75 |
Q |
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| T |
34880616 |
atgcacgtcaacgtgctctgcaaaagatgggtgcggaacaaccacaagtgaaatctctt |
34880674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 21808610 - 21808485
Alignment:
| Q |
79 |
cttgagattccaattgctattgctccactccatgaaaatgcacgtcatcgtgggctacctcggaaaccaattccaacacagtccatgatgtatgtttcct |
178 |
Q |
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| T |
21808610 |
cttgagattccaatttcaattcttccactccatgaaaatacacgttatcgtgcgctacctcgaacaccaattccaacacaggccttggtgtatgtttctt |
21808511 |
T |
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| Q |
179 |
agttgttgcaatcttctgcgcctttg |
204 |
Q |
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| T |
21808510 |
agttgctgcactcttttgcacctttg |
21808485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 34216520 - 34216560
Alignment:
| Q |
115 |
aatgcacgtcatcgtgggctacctcggaaaccaattccaac |
155 |
Q |
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| T |
34216520 |
aatgcacgtcatcgtgtgctacctcggaaaccaattccaac |
34216560 |
T |
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