View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_low_5 (Length: 485)
Name: NF1898_low_5
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 43017529 - 43017059
Alignment:
| Q |
1 |
caaaagctgaattgtgcatgcaaaacacaaaaatgatatataagcaacaaacaagaaaaccatttcctcttccaattttcttctattcttggttacatct |
100 |
Q |
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| T |
43017529 |
caaaagctgaattgtgcatgcaaaacacaaaaatgatatataagcaacaaacaagaaaaccatttcctcttccaattttcttctattcttggttacatct |
43017430 |
T |
|
| Q |
101 |
cctgtgacctctgagataaattcgacttgttatgtaatctcaggtttatgtgatgatttattattttgaatgtttacttaaattcttcaacactattcaa |
200 |
Q |
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| T |
43017429 |
cctgtgacctctgagataaattcgacttgttatgtaatctcaggtttatgtgatgatttattattttgaatgtttacttaaattcttcaacactattcaa |
43017330 |
T |
|
| Q |
201 |
ataagtttacttgatcactctcttattcttgttttcaaaggtggagcgaggattgggagggtaaagtttgtagggtttaaagagtagtggaacgaggatt |
300 |
Q |
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| T |
43017329 |
ataagtttacttgatcactctcttattcttgttttcaaaggtggagcgaggattgggagggtaaagtttgtagggtttaaagagtagtggaacgaggatt |
43017230 |
T |
|
| Q |
301 |
tcaaggtgataaggtcaatgttgttttggtagacctccccaatcatatatttaatcatcggaagtattaattagtccatgttttgtttcacatttagagg |
400 |
Q |
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| T |
43017229 |
tcaaggtgataaggtcaatgttgttttggtagacctccccaatcatatatttaatcatcggaagt----attagtccatgttttgtttcacatttagagg |
43017134 |
T |
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| Q |
401 |
agatgaactcgattatgcaggtgtagaattaattgtttcaacatgttagtgtctttgttgtgtccgttgtctgtg |
475 |
Q |
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| T |
43017133 |
agatgaactcgattatgcaggtgtagaattaattgtttcaacatgttagtgtctttgttgtgtccgttgtctgtg |
43017059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 35057230 - 35057106
Alignment:
| Q |
48 |
caaacaagaaaaccatttcctcttccaattttcttctattcttggttacatctcctgtgacctctgagataaattcgacttgttatgtaatctcaggttt |
147 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| ||||||||| || ||||| ||||||||||||||| |
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| T |
35057230 |
caaacaagaaaaccatttcctcttccaattttct---attcttggttacatctccagtgatctctaagataaatttgatttgttctgtaatctcaggttt |
35057134 |
T |
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| Q |
148 |
atgtgatgatttattattttgaatgttt |
175 |
Q |
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| T |
35057133 |
atgtgatgatttattattttgaatgttt |
35057106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 35057058 - 35056999
Alignment:
| Q |
179 |
taaattcttcaacactattcaaataagtttacttgatcactctcttattcttgttttcaa |
238 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
35057058 |
taaattattcaacactattcaaataagtttacttgatctctctcttatttttgttttcaa |
35056999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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