View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_low_7 (Length: 384)
Name: NF1898_low_7
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 73 - 379
Target Start/End: Original strand, 37587874 - 37588181
Alignment:
| Q |
73 |
actttcacatgtttccaattagatacgttactgattttgagttagaacttgatttccaattagataccattactttctccatacattggtaattgctagc |
172 |
Q |
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| T |
37587874 |
actttcacatgtttccaattagatacgttactgattttgagttagaacttgatttccaattagataccattactttctccatacattggtaattgctagc |
37587973 |
T |
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| Q |
173 |
gatatccgtatactgattttgagttagaaaactctactccccttgttttatgactaactaatactttttgaacgattttccttctcttcggccaaatttg |
272 |
Q |
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| T |
37587974 |
gatatccatatactgattttgagttagaaaactctactccgcttgttttatgactaactaatactttttgaacgattttccttcttttcggccaaatctg |
37588073 |
T |
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| Q |
273 |
gaatactagtattttttgactc-actcttttgctagaaacctaacttcattgtgttttttatcctttgagatttgcctttgatgatagaaacaacttcta |
371 |
Q |
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| T |
37588074 |
gaatactagtattttttgactctaatcttttgctagaaacctaacttcattgtgttttttatcctttgagatttgcctttgatgatagaaacaacttcta |
37588173 |
T |
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| Q |
372 |
tattgcct |
379 |
Q |
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|||||||| |
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| T |
37588174 |
tattgcct |
37588181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 37583191 - 37583254
Alignment:
| Q |
225 |
actaactaatactttttgaacgattttccttctcttcggccaaatttggaatactagtattttt |
288 |
Q |
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|||| ||||||||| ||||| |||||||||||| || |||||||||||||||||||||||||| |
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| T |
37583191 |
actagctaatacttattgaaagattttccttcttgtctgccaaatttggaatactagtattttt |
37583254 |
T |
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