View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_low_8 (Length: 378)
Name: NF1898_low_8
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_low_8 |
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| [»] scaffold0530 (1 HSPs) |
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Alignment Details
Target: scaffold0530 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 378
Target Start/End: Original strand, 5628 - 5993
Alignment:
| Q |
13 |
atacttaccataagatcggctgcttgtgtcggtacagtagcctcattcttgtctggagaaggatctgactcatctacactcaacaaatcacctacacatg |
112 |
Q |
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| T |
5628 |
atacttaccataagatcggctgcttgtgtcggtacagtagcctcattcttgtctggagaaggatctgactcatctacactcaacaaatcacctacacatg |
5727 |
T |
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| Q |
113 |
ttgcatcttctttaccagtacttccttcctctttgccattctgataataaacaaattataattggaacacttccttcgactttaaaatgaaaaatcgaag |
212 |
Q |
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| T |
5728 |
ttccatcttctttaccagtacttccttcctctttgccattctgataataaacaaattataattggaacacttccttcggctttaaaatgaaaaatcgaag |
5827 |
T |
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| Q |
213 |
ttcagagcctagctagcatcataccacttcgtactcgagcattaaagtgttgggagcctccttaatatattcttccatagtcgtcataaaggaagcagga |
312 |
Q |
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| T |
5828 |
ttcagagcctagctagcatcataccacttcgtactcgagcattaaagtgttgggagcctccttaatatattcttccatagtcgtcataaaggaagcagga |
5927 |
T |
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| Q |
313 |
ggctacaaaatacattcatatatacatatattcataaaaaattgtatcataggaggaaattacatg |
378 |
Q |
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| T |
5928 |
ggctacaaaatacattcatatagacatatattcatcaaaaattgtatcataggaggaaattacatg |
5993 |
T |
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