View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1898_low_9 (Length: 359)
Name: NF1898_low_9
Description: NF1898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1898_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 1351014 - 1350755
Alignment:
| Q |
19 |
catgtgaaatcaatgcaaacttcgctcttgagtgattattactaattatgaattttcaaattttatcaataaaacttgacaaacttgagcatttttaaca |
118 |
Q |
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| T |
1351014 |
catgtgaaatcaatgcaaacttcgctcttgagtgattattactaattatgaattttcaaattttatcaataaaacttgacaaacttgagcatttttaaca |
1350915 |
T |
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| Q |
119 |
ttaagaaaccaaacagtaatacaccaacttcacaagaccaactatgaacataaaatgagattatcaattgagtagatagcacaagcaatgtcacagaact |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350914 |
ttaagaaaccaaacagtaatacaccaacttcacaagaccaactatgaacataaaatgagattatcaattgagtagatagcacaagcaatgtcacagaact |
1350815 |
T |
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| Q |
219 |
agaacttgtataattgttgagaagagttttgttcataaggttactcattacaatttctct |
278 |
Q |
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| T |
1350814 |
agaacttgtataattgttgagaagagttttgttcataaggttactcattacaatttctct |
1350755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 1361537 - 1361399
Alignment:
| Q |
19 |
catgtgaaatcaatgcaaacttcgctc-ttgagtgattattactaattatgaattttcaaattttatcaataaaacttgacaaacttgagcatttttaac |
117 |
Q |
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| T |
1361537 |
catgttaaatcaatgctaactttgctaattgagtgattattactaattataaattttcaaattttatctataaaacttgacaaacttgagcatttttaac |
1361438 |
T |
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| Q |
118 |
attaagaaaccaaacagtaatacaccaacttcacaagacc |
157 |
Q |
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| T |
1361437 |
attgagtaaccaaacagtaataca-cgacttcacaagacc |
1361399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 1354910 - 1354990
Alignment:
| Q |
56 |
attactaattatgaattttcaaattttatcaataaaacttgacaaacttgagcatttttaacattaagaaaccaaacagtaa |
137 |
Q |
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| T |
1354910 |
attactaattatgaattttcaaattacatctaaaaaacttcacaaatttgagca-ttctaacattaagaaactaaatagtaa |
1354990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 341
Target Start/End: Complemental strand, 1350738 - 1350704
Alignment:
| Q |
307 |
catataacaacatcaacaactatgcaacgatatcc |
341 |
Q |
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| T |
1350738 |
catataacaacatcaacaactatgcaacgatatcc |
1350704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 1361318 - 1361280
Alignment:
| Q |
228 |
ataattgttgagaagagttttgttcataaggttactcat |
266 |
Q |
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| T |
1361318 |
ataattgttgagaagagttttatccataaggttactcat |
1361280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 29051899 - 29051994
Alignment:
| Q |
58 |
tactaattatgaattttcaaattttatcaataaaacttgacaaacttgagcatttttaacattaagaaaccaaacagtaatacaccaacttcacaa |
153 |
Q |
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| T |
29051899 |
tactaattatgaattttcaaattacatatagaaaacttcacaaatttgagcatttctaacattgagaaaccaaatagtaacacactgacttcacaa |
29051994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 13590735 - 13590652
Alignment:
| Q |
59 |
actaattatgaattttcaaattttatcaataaaacttgacaaacttgagcatttttaacattaagaaaccaaacagtaatacac |
142 |
Q |
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| T |
13590735 |
actaatcatgaattttcaaattacatctataaaactatacaaatttgagcatttttaccactgagaaaccaaatagtaacacac |
13590652 |
T |
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