View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18990_low_1 (Length: 675)
Name: NF18990_low_1
Description: NF18990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18990_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 599; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 19 - 665
Target Start/End: Complemental strand, 38752859 - 38752213
Alignment:
| Q |
19 |
aaaaactcattgtttgtactgacatggtcatatgcttcttaaagttagtaaactatttagatagccaaaagaagagttacttaaatgatatgtcatatat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752859 |
aaaaactcattgtttgtactgacatggtcatatgcttcttaaagttagtaaactatttagatagccaaaagaagagttacttaaatgatatgtcatatat |
38752760 |
T |
|
| Q |
119 |
ttttgtttcatagagtaaaattataatgtgaaaatgttgggtatgactcatagtttaccggtaaatagataagtttattgatcagagataatcttataaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
38752759 |
ttttgtttcatagagtaaaattataatgtgaaaatgttgggtatgactcatagtttaccggtaaatagacaagtttattgatcagagataatcttgtaaa |
38752660 |
T |
|
| Q |
219 |
ttggactgtagtatttaaacataagttgtctactgatcagatataatcatgtaaattggaccgtagtatttaaacaaaatttgtaatatatatgcaatcc |
318 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38752659 |
ttggactgtagtatttaaacacaagttgtctactgatcagatataatcatgtaaattggaccgtagtatttaaataaaatttgtaatatatatgcaatcc |
38752560 |
T |
|
| Q |
319 |
taaatttgattaatggaaaaatattacaaccactttatagtcggatacgtaggcacaattggctgaactctctaatcaaacctagtgtattctttgtgaa |
418 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
38752559 |
gaaatttgactaatggaaaaatattacaaccactttgtagtcggatacgtaggcacaattggccgaactctctaatcaaacctagtgtattcattgtgaa |
38752460 |
T |
|
| Q |
419 |
taagaggtgttgctctaatagaaagagagtgatagaggttattttaaactcggtggtgcattagtgaatgagtaagagaatactataacataacaaagca |
518 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752459 |
taagaggtgttgctctaatagaaagagagtgagagaggttattttaaacttggtggtgcattagtgaatgagtaagagaatactataacataacaaagca |
38752360 |
T |
|
| Q |
519 |
taaaattagataagtagcacaaaagtctttggtttagtgtgatggctttcacattagagaggtgtgaagataacatggtgttcactatggagtctcagaa |
618 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752359 |
taaaattagataagtagcacaaaagtctttggtttagtgtgatggctttcacattagagaggtgtgaagataacatggtgttcactatggagtctcagaa |
38752260 |
T |
|
| Q |
619 |
atcagtgcctgctcctttcttgacaaagacataccaacttgatgatg |
665 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38752259 |
atcagtgcctgctcctttcttgacaaagacataccaacttgttgatg |
38752213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 10842682 - 10842645
Alignment:
| Q |
270 |
taaattggaccgtagtatttaaacaaaatttgtaatat |
307 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| |
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|
| T |
10842682 |
taaattggaccgtagtatttaaacacaaattgtaatat |
10842645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 38779442 - 38779482
Alignment:
| Q |
207 |
taatcttataaattggactgtagtatttaaacataagttgt |
247 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| ||||||| |
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|
| T |
38779442 |
taatcttgtaaactggactgtagtatttaaacacaagttgt |
38779482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 34655396 - 34655354
Alignment:
| Q |
262 |
taatcatgtaaattggaccgtagtatttaaacaaaatttgtaa |
304 |
Q |
| |
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||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
34655396 |
taatcatgtaaattggaccgtagcatttaaagtaaatttgtaa |
34655354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 37410071 - 37410026
Alignment:
| Q |
262 |
taatcatgtaaattggaccgtagtatttaaacaaaatttgtaatat |
307 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | || ||||||||| |
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|
| T |
37410071 |
taatcttgtaaattggaccgtagtatttaaaaacaaattgtaatat |
37410026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 4999955 - 4999915
Alignment:
| Q |
207 |
taatcttataaattggactgtagtatttaaacataagttgt |
247 |
Q |
| |
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||||||| |||||||||| |||||||||||| ||||||||| |
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| T |
4999955 |
taatcttgtaaattggaccgtagtatttaaatataagttgt |
4999915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 34358054 - 34358094
Alignment:
| Q |
204 |
agataatcttataaattggactgtagtatttaaacataagt |
244 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||||||||||||| |
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|
| T |
34358054 |
agataatcttgtaaattgaactgtagcatttaaacataagt |
34358094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 37855001 - 37855033
Alignment:
| Q |
205 |
gataatcttataaattggactgtagtatttaaa |
237 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
37855001 |
gataatcttataaattggaccgtagtatttaaa |
37855033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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