View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18991_high_10 (Length: 250)
Name: NF18991_high_10
Description: NF18991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18991_high_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 36908099 - 36907863
Alignment:
| Q |
13 |
aatataagttattttggtaaaacaatatcttattttatatattgttttacaacatcactgaattcctcccctnnnnnnnncatcattgaattcttaattt |
112 |
Q |
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| T |
36908099 |
aatataagttattttggtaaaacaatatcttattttatatattgttttacaacatcactgaattcctcccctaaaaaaaacat-attgaattcttaattt |
36908001 |
T |
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| Q |
113 |
tgttcttttatatcctcgttatttatcattctcatatttatacttttgtaatatctttttcgtataccgtttattaatgaagttaatgaatggtgtgatt |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36908000 |
tgttcttttatatcctcgttatttatcactctcatatttatacttttgtaatatctatttcgtataccgtttattaatgaagttaacgaatggtgtgatt |
36907901 |
T |
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| Q |
213 |
ttagaaagtgaaacatatgttttgaagtcggcgggtaa |
250 |
Q |
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| T |
36907900 |
ttagaaagtgaaacatatgttttgaagtcggcgggtaa |
36907863 |
T |
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