View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18991_high_3 (Length: 463)
Name: NF18991_high_3
Description: NF18991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18991_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 61 - 450
Target Start/End: Complemental strand, 7110558 - 7110189
Alignment:
| Q |
61 |
atgggaaataattcaatttcttaaaacaatatttattcttgctgaccaaaatgnnnnnnngtcattgaacaaatcccattttcatgtgtataaattaaga |
160 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7110558 |
atgggaaataattcaattttttgaaacaatatttattcttgctgaccaaaatgaaaatat-tcaatgaacaaatcccattttcatgtgtataaattaaga |
7110460 |
T |
|
| Q |
161 |
ttgatgtaagtcttgcagacatgagtatacatacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcatactatttgcatt |
260 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7110459 |
ttgatgtaagtcttgtagacatgagtataca----acaatggcaatt------------atcttaaagttttcaatactcttaatcatactacttgcatt |
7110376 |
T |
|
| Q |
261 |
cacgg---ctagagagactatagctattattaacaataacgtgcaggctccaactctaccaatcttgcttcgccatacaacagtttatattatcaatatg |
357 |
Q |
| |
|
| ||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7110375 |
cgcggtggctagagagactgtagcta------acaataaggtgcaggctccaactctaccaatcttgcttcgccatacaacagtttatattatcaataag |
7110282 |
T |
|
| Q |
358 |
gtgaaggctccaaatccaacacccttgactcttcgttgccaatctaaagatgacgatcttgaagaacaaacaatccattataaaacacaggtt |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7110281 |
gtgaaggctccaaatccaacacccttgactcttcgttgccaatctaaagatgacgatcttgaagaacatacaatccattataaaacacaggtt |
7110189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 149 - 284
Target Start/End: Complemental strand, 7116582 - 7116451
Alignment:
| Q |
149 |
tataaattaagattgatgtaagtcttgcagacatgagtatacatacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcat |
248 |
Q |
| |
|
|||||||||||||||| |||| ||||| || ||| | | ||||||||||||||| ||||||||| ||||||| |||| ||||||||||| ||||||| |
|
|
| T |
7116582 |
tataaattaagattgaggtaaatcttgtaggcat---tgtgcatacaacaatggcagttccaagtt-aattaccataaaattttcaatactactaatcat |
7116487 |
T |
|
| Q |
249 |
actatttgcattcacggctagagagactatagctat |
284 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| |
|
|
| T |
7116486 |
actagttgcattcgtggctagagagactatagctat |
7116451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 286
Target Start/End: Complemental strand, 17374106 - 17374010
Alignment:
| Q |
190 |
catacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcatactatttgcattcacggctagagagactatagctatta |
286 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| || ||||| |||||| ||||||||||||| |||| |||||||| ||||||||||||| |
|
|
| T |
17374106 |
catacaacaatggcagttccaagtacaattaccttcaaattttcgatactcctaatcatactattctcatttgaagctagagaaactatagctatta |
17374010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 285
Target Start/End: Original strand, 31117675 - 31117808
Alignment:
| Q |
149 |
tataaattaagattgatgtaagtcttgcagacatgagtatacatacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcat |
248 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||| | | |||||||||||||||||||||||| |||| |||||||| | ||||||||| ||||||| |
|
|
| T |
31117675 |
tataaattaagattgatgtatgtcttgtaggcat---tgtgcatacaacaatggcaattccaagtgcaatcaccttaaaatcatcaatactcctaatcat |
31117771 |
T |
|
| Q |
249 |
actatttgcattcacggctagagagactatagctatt |
285 |
Q |
| |
|
||| ||||||| ||||||||||||||| |||||| |
|
|
| T |
31117772 |
gctacttgcatttgaggctagagagactatcgctatt |
31117808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 6606533 - 6606641
Alignment:
| Q |
149 |
tataaattaagattgatgtaagtcttgcagacatgagtatacatacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcat |
248 |
Q |
| |
|
|||||||||| |||| || ||||||||||| ||| | | ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
6606533 |
tataaattaatattgttgcaagtcttgcaggcat---tgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcac |
6606629 |
T |
|
| Q |
249 |
actatttgcatt |
260 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
6606630 |
actacttgcatt |
6606641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 284
Target Start/End: Original strand, 6631704 - 6631798
Alignment:
| Q |
190 |
catacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcatactatttgcattcacggctagagagactatagctat |
284 |
Q |
| |
|
|||||||||||| || |||||| |||||||| |||||| |||||||||||| ||||||||||| ||||||| |||||| || ||||||||||| |
|
|
| T |
6631704 |
catacaacaatgacagttccaaattcaattagcttaaaattttcaatactcataatcatactacttgcatttgaggctagtgatactatagctat |
6631798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 6615652 - 6615728
Alignment:
| Q |
187 |
atacatacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatca---tactatttgcatt |
260 |
Q |
| |
|
|||||||||||||||| | || ||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
6615652 |
atacatacaacaatggaagttacaagtccaattaccttaaaattttcaatattcttaatcatggtactatttgcatt |
6615728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 414
Target Start/End: Original strand, 9036816 - 9036849
Alignment:
| Q |
381 |
cttgactcttcgttgccaatctaaagatgacgat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9036816 |
cttgactcttcgttgccaatctaaagatgacgat |
9036849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 6613025 - 6613116
Alignment:
| Q |
191 |
atacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcatactatttgcattcacggctagagagactatagct |
282 |
Q |
| |
|
||||||||||| ||| ||||||| |||||| |||||| | |||||||||| ||| | |||| ||||||| ||| ||||||||||||||| |
|
|
| T |
6613025 |
atacaacaatgacaactccaagtacaattatcttaaaatgttcaatactcctaactacactacttgcatttgaggccagagagactatagct |
6613116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 286
Target Start/End: Complemental strand, 596508 - 596412
Alignment:
| Q |
190 |
catacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcatactatttgcattcacggctagagagactatagctatta |
286 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| || || || |||||| ||||||||||||| |||| |||||||| ||||||||||||| |
|
|
| T |
596508 |
catacaacaatggcagttccaagtacaattaccttcaaattatcgatactcctaatcatactattctcatttgaagctagagaaactatagctatta |
596412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University