View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18991_low_1 (Length: 522)
Name: NF18991_low_1
Description: NF18991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18991_low_1 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 14 - 522
Target Start/End: Original strand, 41590044 - 41590552
Alignment:
| Q |
14 |
agggatagatcttccaaattcattggagagagtgaatgaaacaggtcttaggctttcaagttattgcaaacgtttcaatgttccttttgagtacaatggt |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41590044 |
agggatagatcttccaaattcattggagagagtgaatgaaacaggtcttaggctttcaagttattgcaaacgtttcaatgttccttttgagtacaatggt |
41590143 |
T |
|
| Q |
114 |
attgcaaaaaattgggaaagtatcaaagttcaggattttaagataaggaaaaatgagtttgttgcagtgacttgtgtgtttaagtttgagaatctacctg |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41590144 |
attgcaaaaaattgggaaagtatcaaagttcaggattttaagataaggaaaaatgagtttgttgcagtgacttgtgtgtttaagtttgagaatctacctg |
41590243 |
T |
|
| Q |
214 |
atgagacagttgtttcggagaatccgaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaatggtggtta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41590244 |
atgagacagttgtttcggagaatccgaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaatggtggtta |
41590343 |
T |
|
| Q |
314 |
tgatgcaccnnnnnnngtgacaaggtttaaggaagctgttttttattattcagcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcct |
413 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41590344 |
tgatgcacctttttttgtgacaaggtttaaggaagctgttttttattattcagcattgtttgatatgcttgattacaacaatgttgaacgtgaggatcct |
41590443 |
T |
|
| Q |
414 |
gttaggttgatgtttgagggagacgtttgggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatatatgc |
513 |
Q |
| |
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|||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41590444 |
tttaggttgatgtttgaggtagttttttgggggaatgatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatatatgc |
41590543 |
T |
|
| Q |
514 |
attggcatt |
522 |
Q |
| |
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||||||||| |
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| T |
41590544 |
attggcatt |
41590552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 14 - 522
Target Start/End: Original strand, 41557384 - 41557892
Alignment:
| Q |
14 |
agggatagatcttccaaattcattggagagagtgaatgaaacaggtcttaggctttcaagttattgcaaacgtttcaatgttccttttgagtacaatggt |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41557384 |
agggatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagtacaatggt |
41557483 |
T |
|
| Q |
114 |
attgcaaaaaattgggaaagtatcaaagttcaggattttaagataaggaaaaatgagtttgttgcagtgacttgtgtgtttaagtttgagaatctacctg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||| | |
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|
| T |
41557484 |
attgcaaaaaattgggaaagtatcaaagttgaagattttaacataaggaaaaacgagtttgttgctgtgaattgtttgtttaagtttgagaatctactgg |
41557583 |
T |
|
| Q |
214 |
atgagacagttgtttcggagaatccgaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaatggtggtta |
313 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41557584 |
atgagacagtagtttcggagaatccgaagggtgctgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggtta |
41557683 |
T |
|
| Q |
314 |
tgatgcaccnnnnnnngtgacaaggtttaaggaagctgttttttattattcagcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcct |
413 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41557684 |
cgatgaacctttttttgtgacaaggtttaaggaagctgtttttcattattcagcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcct |
41557783 |
T |
|
| Q |
414 |
gttaggttgatgtttgagggagacgtttgggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatatatgc |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
41557784 |
gttaggttgatgtttgagggagacgtttgggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatacaggc |
41557883 |
T |
|
| Q |
514 |
attggcatt |
522 |
Q |
| |
|
||||||||| |
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|
| T |
41557884 |
attggcatt |
41557892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 522
Target Start/End: Original strand, 41583513 - 41584021
Alignment:
| Q |
14 |
agggatagatcttccaaattcattggagagagtgaatgaaacaggtcttaggctttcaagttattgcaaacgtttcaatgttccttttgagtacaatggt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41583513 |
agggatagatcttccaaattcattggagagagtgaaagaaactggtcttaggcttgcaagttattgcaaacgtttcaatgttccttttgagtacaatggt |
41583612 |
T |
|
| Q |
114 |
attgcaaaaaattgggaaagtatcaaagttcaggattttaagataaggaaaaatgagtttgttgcagtgacttgtgtgtttaagtttgagaatctacctg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| |||| |||| ||||||||||||||||||||| | |
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| T |
41583613 |
attgcaaaaaattgggaaagtatcaaagttgaagattttaagataaggaaaaacgagtttgttgctgtgaattgtttgtttaagtttgagaatctactgg |
41583712 |
T |
|
| Q |
214 |
atgagacagttgtttcggagaatccgaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaatggtggtta |
313 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41583713 |
atgagacagtagtttcggagaatccgaagggtgatgttttggatttgattagaaagacaaatccgaatatatttattcatagcattgttaatggtggtta |
41583812 |
T |
|
| Q |
314 |
tgatgcaccnnnnnnngtgacaaggtttaaggaagctgttttttattattcagcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcct |
413 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
41583813 |
cgatgaacctttttttgtgacaaggtttaaggaagctgtttttcattattcagcattgtttgatacgcttgatcacaacaatgttgaacgtgaggatcct |
41583912 |
T |
|
| Q |
414 |
gttaggttgatgtttgagggagacgtttgggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatatatgc |
513 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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|
| T |
41583913 |
attaggttgatgtttgaggaagtgttttgggggaaggatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatacaggc |
41584012 |
T |
|
| Q |
514 |
attggcatt |
522 |
Q |
| |
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||||||||| |
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|
| T |
41584013 |
attggcatt |
41584021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 522
Target Start/End: Original strand, 41571096 - 41571604
Alignment:
| Q |
14 |
agggatagatcttccaaattcattggagagagtgaatgaaacaggtcttaggctttcaagttattgcaaacgtttcaatgttccttttgagtacaatggt |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||| || ||||||| |||||||| |||||||||||||| ||||||| |
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|
| T |
41571096 |
agggatagatcttccaaatttgttggagagagtgaatggaacaggtcttaggcttgcagcttattgcgaacgtttcggtgttccttttgagttcaatggt |
41571195 |
T |
|
| Q |
114 |
attgcaaaaaattgggaaagtatcaaagttcaggattttaagataaggaaaaatgagtttgttgcagtgacttgtgtgtttaagtttgagaatctacctg |
213 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||| || |
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|
| T |
41571196 |
attgcgaaaaattgggaaagtatcaaagttgaggattttaagataaggaaaaatgagtttgttgctgtgaattgttattttaaatttgagaatctacttg |
41571295 |
T |
|
| Q |
214 |
atgagacagttgtttcggagaatccgaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttattcatagcattgttaatggtggtta |
313 |
Q |
| |
|
||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
41571296 |
atgagacggttgctccggagaatccaaggggtgctgttttggatttgattaagaaggcaaatccgaatatatttgttcaaagcattgttaatggttgtta |
41571395 |
T |
|
| Q |
314 |
tgatgcaccnnnnnnngtgacaaggtttaaggaagctgttttttattattcagcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcct |
413 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41571396 |
tgatgcacctttttttgtgacaaggtttaaagaagctgtttttcattactcatcattgtttgatatgcttgataacaacaatgttgaacgtgaggatcct |
41571495 |
T |
|
| Q |
414 |
gttaggttgatgtttgagggagacgtttgggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatatatgc |
513 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41571496 |
aataggttgatgtttgaggaagagttttgggggaaggatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatataggc |
41571595 |
T |
|
| Q |
514 |
attggcatt |
522 |
Q |
| |
|
| ||||||| |
|
|
| T |
41571596 |
aatggcatt |
41571604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 508
Target Start/End: Original strand, 41598570 - 41598622
Alignment:
| Q |
456 |
atgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacata |
508 |
Q |
| |
|
||||||||| |||| |||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
41598570 |
atgaatgttgtagcatgtgaaggttttgagagggttgagaggcccgagacata |
41598622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 509
Target Start/End: Original strand, 22546323 - 22546375
Alignment:
| Q |
457 |
tgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatat |
509 |
Q |
| |
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||||||||||||| |||||||||||||| || || |||||||||||||||||| |
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|
| T |
22546323 |
tgaatgttatagcctgtgaaggttgtgagagagtagagaggccagagacatat |
22546375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 508
Target Start/End: Complemental strand, 23916192 - 23916101
Alignment:
| Q |
417 |
aggttgatgtttgagggagacgtttgggggaaagatataatgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacata |
508 |
Q |
| |
|
||||||||||||||| ||| | ||||||| || |||||||| ||||||| |||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
23916192 |
aggttgatgtttgagaaagagttctgggggagggaagtaatgaatattatagcctgtgaaggttctcagagggttgagaggccagagacata |
23916101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 510
Target Start/End: Complemental strand, 23911611 - 23911557
Alignment:
| Q |
456 |
atgaatgttatagcttgtgaaggttgtgatagggttgagaggccagagacatata |
510 |
Q |
| |
|
||||| ||| ||||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
23911611 |
atgaacgttgtagcttgtgaaggtttagagagagttgagaggccagagacatata |
23911557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 23904977 - 23905013
Alignment:
| Q |
75 |
tattgcaaacgtttcaatgttccttttgagtacaatg |
111 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
23904977 |
tattgcaagcgtttcaatgttcctttcgagtacaatg |
23905013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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