View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18991_low_12 (Length: 242)
Name: NF18991_low_12
Description: NF18991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18991_low_12 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: scaffold0252 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 22254 - 22028
Alignment:
| Q |
1 |
attaaacctttttcaataaatnnnnnnncttgtactgatcatacatgaaaacttctaacaaaatcaaaaataacttgactgacaccatatattatgtcct |
100 |
Q |
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| T |
22254 |
attaaacctttttcaataaataaaaaaacttgtactgatcatacataaaaacttctaacaaaatcaaaaataacttgactgacaccatatattatgtcct |
22155 |
T |
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| Q |
101 |
aatggttttccaagtgcaaagacaaatccacctaacagcttgacaaaagtt----attagctgattaaagacaagatgatactaagaaaaacaaatcagg |
196 |
Q |
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| T |
22154 |
aatggttttccaagtgcaaagacaaatccacctaacagcttgacaaaagttattaattagctgattaaagacaagatgatactaagaaaaacaaatcagg |
22055 |
T |
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| Q |
197 |
gatcaagtagcagctatctgactatcg |
223 |
Q |
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||||||||||||||||||||||||||| |
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| T |
22054 |
gatcaagtagcagctatctgactatcg |
22028 |
T |
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Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 32 - 223
Target Start/End: Complemental strand, 43436756 - 43436565
Alignment:
| Q |
32 |
gtactgatcatacatgaaaacttctaacaaaatcaaaaataacttgactgacaccatatattatgtcctaatggttttccaagtgcaaagacaaatccac |
131 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
43436756 |
gtactaatcatacatgaaaacttctaacaaaataaaaaataacttgactgacaccatatattatctcctaatggttttccaagtgcaaagaaaaatccac |
43436657 |
T |
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| Q |
132 |
ctaacagcttgacaaaagttattagctgattaaagacaagat-gatactaagaaaaacaaatcagggatcaagtagcagctatctgactatcg |
223 |
Q |
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| T |
43436656 |
ccaacagcttgacaaaagttattggttgattaaagatgagatagatactaagaaaaa-aaatcagagatcaagtagcagctatctgactatcg |
43436565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 40185075 - 40185152
Alignment:
| Q |
78 |
actgacaccatatattatgtcctaatggttttccaagtgcaaagacaaatccacctaacagcttgacaaaagttatta |
155 |
Q |
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||||||| |||||| ||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40185075 |
actgacatcatatactatgtactgatggttttccaaatgcaaagacaaatccacctaacagcttgataaaagttatta |
40185152 |
T |
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