View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18991_low_15 (Length: 238)

Name: NF18991_low_15
Description: NF18991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18991_low_15
NF18991_low_15
[»] chr2 (6 HSPs)
chr2 (65-238)||(40947987-40948164)
chr2 (20-66)||(14805572-14805618)
chr2 (20-68)||(37259667-37259715)
chr2 (20-64)||(16431911-16431955)
chr2 (20-66)||(17692654-17692700)
chr2 (28-65)||(37080773-37080810)
[»] chr7 (3 HSPs)
chr7 (20-64)||(29245312-29245356)
chr7 (20-65)||(45974483-45974528)
chr7 (20-65)||(6444201-6444246)
[»] scaffold0166 (1 HSPs)
scaffold0166 (20-70)||(25086-25136)
[»] chr5 (2 HSPs)
chr5 (20-70)||(24782703-24782753)
chr5 (20-70)||(39885875-39885925)
[»] chr8 (2 HSPs)
chr8 (20-64)||(533744-533788)
chr8 (20-64)||(13800640-13800684)
[»] chr3 (4 HSPs)
chr3 (20-64)||(29835818-29835862)
chr3 (25-65)||(39831200-39831240)
chr3 (28-64)||(20108113-20108149)
chr3 (20-64)||(29702389-29702433)
[»] chr4 (3 HSPs)
chr4 (25-64)||(20135476-20135515)
chr4 (20-65)||(15530059-15530104)
chr4 (20-65)||(55917400-55917445)
[»] chr1 (3 HSPs)
chr1 (20-75)||(45346253-45346308)
chr1 (20-74)||(52382608-52382662)
chr1 (20-64)||(12983580-12983624)
[»] scaffold0685 (1 HSPs)
scaffold0685 (20-74)||(6621-6675)
[»] scaffold0896 (1 HSPs)
scaffold0896 (20-64)||(1986-2030)
[»] chr6 (1 HSPs)
chr6 (20-64)||(7124334-7124378)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 65 - 238
Target Start/End: Original strand, 40947987 - 40948164
Alignment:
Q  65 ataaataaaacctagaggccaaaactaatactaatagaagaaattaagatcaagaaagattgttcatcgaggtactattttccctgtagtgctgcctatt 164  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40947987 ataaataaaacctagaggccaaaactaatactaatagaagaaa----gatcaagaaagattgttcatcgaggtactattttccctgtagtgctgcctatt 40948082  T
Q  165 tgcttggatgtgtatccagatgaagaaagatcaagaact--------gatgatagaagagtctatgcaatttgtaaacacaa 238  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  40948083 tgcttggatgtgtatccagatgaagaaagatcaagaactgatgaagagatgatagaagagtctatgcaatttgtaaacacaa 40948164  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 14805618 - 14805572
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttcccat 66  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  14805618 cttctctgaaaaattcaatttaatgacttcaccatagaatttcccat 14805572  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 37259715 - 37259667
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttcccataa 68  Q
    |||| |||||||| |||||||||| ||||||||||||||||||||||||    
T  37259715 cttctctgaaaaagtcaatttaatgacttcaccatagaatttcccataa 37259667  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 16431911 - 16431955
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttccc 64  Q
    |||| |||||||| |||||||||| ||||||||||||||||||||    
T  16431911 cttctctgaaaaagtcaatttaatgacttcaccatagaatttccc 16431955  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 17692654 - 17692700
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttcccat 66  Q
    |||| |||||||| |||||||||| ||||||||||||||||| ||||    
T  17692654 cttctctgaaaaagtcaatttaatgacttcaccatagaattttccat 17692700  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 37080773 - 37080810
Alignment:
Q  28 aaaaattcaatttaataacttcaccatagaatttccca 65  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  37080773 aaaaagtcaattgaataacttcaccatagaatttccca 37080810  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 29245312 - 29245356
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttccc 64  Q
    |||| |||||||| |||||||||||||||||||||||||||||||    
T  29245312 cttctctgaaaaagtcaatttaataacttcaccatagaatttccc 29245356  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 45974483 - 45974528
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttccca 65  Q
    |||| |||||||| |||||||||| |||||||||||||||||||||    
T  45974483 cttctctgaaaaagtcaatttaatgacttcaccatagaatttccca 45974528  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 6444201 - 6444246
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttccca 65  Q
    |||||| |||||| |||||| ||| |||||||||||||||||||||    
T  6444201 cttcaccgaaaaagtcaattgaatgacttcaccatagaatttccca 6444246  T

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Target: scaffold0166 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 25136 - 25086
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttcccataaat 70  Q
    |||| |||||||| |||||||||| ||||||||||||||||||||| ||||    
T  25136 cttctctgaaaaagtcaatttaatgacttcaccatagaatttcccaaaaat 25086  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 24782753 - 24782703
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttcccataaat 70  Q
    |||| |||||||| |||||||||| ||||||||||||||||||||| ||||    
T  24782753 cttctctgaaaaagtcaatttaatgacttcaccatagaatttcccaaaaat 24782703  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 39885875 - 39885925
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttcccataaat 70  Q
    |||||| |||||| |||||| || ||||||||||||||||||||| |||||    
T  39885875 cttcaccgaaaaagtcaattgaacaacttcaccatagaatttcccttaaat 39885925  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 533744 - 533788
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttccc 64  Q
    |||| |||||||| |||||||||| ||||||||||||||||||||    
T  533744 cttctctgaaaaagtcaatttaatgacttcaccatagaatttccc 533788  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 13800684 - 13800640
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttccc 64  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||||    
T  13800684 cttcactgaaaaagtcaattgaatgacttcaccatagaatttccc 13800640  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 29835818 - 29835862
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttccc 64  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||||    
T  29835818 cttcactgaaaaagtcaattgaatgacttcaccatagaatttccc 29835862  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 39831240 - 39831200
Alignment:
Q  25 ctgaaaaattcaatttaataacttcaccatagaatttccca 65  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  39831240 ctgaaaaagtcaatttaatgacttcaccatagaatttccca 39831200  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 20108113 - 20108149
Alignment:
Q  28 aaaaattcaatttaataacttcaccatagaatttccc 64  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  20108113 aaaaagtcaattgaataacttcaccatagaatttccc 20108149  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 29702433 - 29702389
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttccc 64  Q
    |||||| |||||| |||||| || |||||||||||||||||||||    
T  29702433 cttcaccgaaaaagtcaattgaacaacttcaccatagaatttccc 29702389  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 20135476 - 20135515
Alignment:
Q  25 ctgaaaaattcaatttaataacttcaccatagaatttccc 64  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  20135476 ctgaaaaagtcaatttaatgacttcaccatagaatttccc 20135515  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 15530104 - 15530059
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttccca 65  Q
    |||||| |||||| |||||| || ||||||||||||||||||||||    
T  15530104 cttcaccgaaaaagtcaattgaacaacttcaccatagaatttccca 15530059  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 55917445 - 55917400
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttccca 65  Q
    |||| |||||||| |||||||||| |||||||||||||||| ||||    
T  55917445 cttctctgaaaaagtcaatttaatgacttcaccatagaattcccca 55917400  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 45346308 - 45346253
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttcccataaataaaac 75  Q
    |||| |||||||| |||||||||| |||||||| ||||||||||| |||| |||||    
T  45346308 cttctctgaaaaagtcaatttaatgacttcaccgtagaatttcccttaaaaaaaac 45346253  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 52382662 - 52382608
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttcccataaataaaa 74  Q
    |||||| ||| || ||| ||||| |||||||||||||||||||||| ||||||||    
T  52382662 cttcaccgaagaagtcattttaacaacttcaccatagaatttcccaaaaataaaa 52382608  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 12983580 - 12983624
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttccc 64  Q
    |||| |||||||| |||||||| | ||||||||||||||||||||    
T  12983580 cttctctgaaaaagtcaatttattgacttcaccatagaatttccc 12983624  T

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Target: scaffold0685 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 6675 - 6621
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttcccataaataaaa 74  Q
    |||||| ||| || ||| ||||| |||||||||||||||||||||| ||||||||    
T  6675 cttcaccgaagaagtcattttaacaacttcaccatagaatttcccaaaaataaaa 6621  T

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Target: scaffold0896 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 1986 - 2030
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttccc 64  Q
    ||||||||||||| |||||| ||| |||||||| |||||||||||    
T  1986 cttcactgaaaaagtcaattgaatgacttcaccgtagaatttccc 2030  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 7124378 - 7124334
Alignment:
Q  20 cttcactgaaaaattcaatttaataacttcaccatagaatttccc 64  Q
    ||||||||||||| |||||| ||| |||||||| |||||||||||    
T  7124378 cttcactgaaaaagtcaattgaatgacttcaccgtagaatttccc 7124334  T

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