View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18991_low_16 (Length: 234)

Name: NF18991_low_16
Description: NF18991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18991_low_16
NF18991_low_16
[»] chr3 (8 HSPs)
chr3 (27-90)||(29835808-29835871)
chr3 (29-82)||(29702388-29702441)
chr3 (27-82)||(12945503-12945558)
chr3 (34-82)||(20108102-20108150)
chr3 (27-88)||(5234755-5234816)
chr3 (28-90)||(31654607-31654669)
chr3 (27-81)||(39831201-39831255)
chr3 (27-83)||(33213413-33213469)
[»] chr5 (10 HSPs)
chr5 (29-82)||(39885867-39885920)
chr5 (27-83)||(41405990-41406046)
chr5 (27-78)||(6767928-6767979)
chr5 (27-81)||(31480460-31480514)
chr5 (27-81)||(40321523-40321577)
chr5 (27-84)||(1836043-1836100)
chr5 (27-81)||(24782709-24782763)
chr5 (25-78)||(20174070-20174123)
chr5 (25-84)||(30628727-30628786)
chr5 (34-78)||(32720174-32720218)
[»] chr8 (5 HSPs)
chr8 (27-83)||(13800638-13800694)
chr8 (27-90)||(3877560-3877623)
chr8 (34-83)||(30089223-30089272)
chr8 (27-83)||(533734-533790)
chr8 (27-82)||(1786484-1786540)
[»] chr4 (8 HSPs)
chr4 (29-81)||(15530060-15530112)
chr4 (27-84)||(24226867-24226924)
chr4 (27-82)||(42063002-42063057)
chr4 (27-82)||(45988115-45988170)
chr4 (27-80)||(47028101-47028154)
chr4 (27-82)||(20135461-20135516)
chr4 (27-77)||(55917405-55917455)
chr4 (27-83)||(28683105-28683160)
[»] chr1 (8 HSPs)
chr1 (27-78)||(49410551-49410602)
chr1 (27-75)||(22105398-22105446)
chr1 (34-85)||(45319603-45319654)
chr1 (27-82)||(47036294-47036349)
chr1 (27-84)||(12983570-12983627)
chr1 (27-82)||(45346263-45346318)
chr1 (29-78)||(39249545-39249594)
chr1 (25-81)||(52382618-52382674)
[»] chr2 (8 HSPs)
chr2 (27-81)||(7091139-7091193)
chr2 (27-81)||(33751506-33751560)
chr2 (27-83)||(16431901-16431957)
chr2 (27-81)||(37080755-37080809)
chr2 (27-81)||(37259671-37259725)
chr2 (27-78)||(17692644-17692695)
chr2 (27-78)||(30778295-30778346)
chr2 (27-81)||(14805574-14805628)
[»] scaffold0896 (1 HSPs)
scaffold0896 (27-83)||(1976-2032)
[»] chr6 (4 HSPs)
chr6 (27-83)||(7124332-7124388)
chr6 (27-78)||(945126-945177)
chr6 (27-78)||(12477921-12477972)
chr6 (25-82)||(12945695-12945752)
[»] chr7 (6 HSPs)
chr7 (27-82)||(29245302-29245357)
chr7 (27-81)||(6444191-6444245)
chr7 (27-81)||(34095881-34095935)
chr7 (27-81)||(45974473-45974527)
chr7 (27-82)||(47329694-47329749)
chr7 (44-78)||(8419406-8419440)
[»] scaffold0166 (1 HSPs)
scaffold0166 (27-81)||(25092-25146)
[»] scaffold0662 (1 HSPs)
scaffold0662 (27-80)||(6980-7033)
[»] scaffold0685 (1 HSPs)
scaffold0685 (25-81)||(6631-6687)


Alignment Details
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 29835808 - 29835871
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccctaaatataa 90  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||    
T  29835808 tgtagggtaacttcactgaaaaagtcaattgaatgacttcaccatagaatttccctatatataa 29835871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 29702441 - 29702388
Alignment:
Q  29 tagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccct 82  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  29702441 tagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaatttccct 29702388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 12945503 - 12945558
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccct 82  Q
    |||||| ||||||||  |||||||||||||||| ||||||||||||||||||||||    
T  12945503 tgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccct 12945558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 20108102 - 20108150
Alignment:
Q  34 taacttcactgaaaaagtcaattgaagaacttcaccatagaatttccct 82  Q
    |||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  20108102 taacttcaccaaaaaagtcaattgaataacttcaccatagaatttccct 20108150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 5234755 - 5234816
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccctaaatat 88  Q
    |||||| ||||||||   ||||||||||||||| |||||||||||| |||||||||| ||||    
T  5234755 tgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaaatttccctatatat 5234816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 31654669 - 31654607
Alignment:
Q  28 gtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccctaaatataa 90  Q
    ||||| ||||||||| |||||||| |||||||  |||||||| ||||||||||| ||| ||||    
T  31654669 gtaggataacttcaccgaaaaagttaattgaatgacttcaccgtagaatttcccaaaagataa 31654607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 39831255 - 39831201
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||| ||||| | ||||||||||||||| ||  ||||||||||||||||||||    
T  39831255 tgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaatttccc 39831201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 33213469 - 33213413
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttcccta 83  Q
    |||| ||||||||||  ||||||||||||| ||  |||| |||||||||||||||||    
T  33213469 tgtatggtaacttcatcgaaaaagtcaattaaatgactttaccatagaatttcccta 33213413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 39885867 - 39885920
Alignment:
Q  29 tagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccct 82  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  39885867 tagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaatttccct 39885920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 41406046 - 41405990
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttcccta 83  Q
    |||||| ||||||||  |||||||||||||||| |||||||||||||||||||||||    
T  41406046 tgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttcccta 41405990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 6767979 - 6767928
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaattt 78  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||||||||||    
T  6767979 tgtagagtaacttcaccgaaaaagtcaattgaggaacttcaccatagaattt 6767928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 31480514 - 31480460
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||||||||||||| ||||||||||||||||  ||||| ||||||||||||||    
T  31480514 tgtagggtaacttcaccgaaaaagtcaattgaatgacttctccatagaatttccc 31480460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 40321523 - 40321577
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||| ||||||||  |||||||||||||||| |||||||||||||||||||||    
T  40321523 tgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccc 40321577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 1836043 - 1836100
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccctaa 84  Q
    |||||| ||||||||  |||||| ||||||||| ||||||||||||||||||||||||    
T  1836043 tgtaggataacttcatcgaaaaaatcaattgaacaacttcaccatagaatttccctaa 1836100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 24782763 - 24782709
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||| ||||||| ||||||||||||||| ||  ||||||||||||||||||||    
T  24782763 tgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccc 24782709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 20174070 - 20174123
Alignment:
Q  25 gctgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaattt 78  Q
    |||||||||| ||||||| |||||||||||||   |||||||||||||||||||    
T  20174070 gctgtagggttacttcaccgaaaaagtcaattttcgaacttcaccatagaattt 20174123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 30628727 - 30628786
Alignment:
Q  25 gctgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccctaa 84  Q
    |||||||||| ||||||| |||||||||| ||  | ||||||||| ||||||||||||||    
T  30628727 gctgtagggttacttcaccgaaaaagtcattttgacaacttcaccgtagaatttccctaa 30628786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 32720174 - 32720218
Alignment:
Q  34 taacttcactgaaaaagtcaattgaagaacttcaccatagaattt 78  Q
    ||||||||| |||||||||||||||| ||||| ||| ||||||||    
T  32720174 taacttcaccgaaaaagtcaattgaataactttaccgtagaattt 32720218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 13800694 - 13800638
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttcccta 83  Q
    ||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  13800694 tgtagagtaacttcactgaaaaagtcaattgaatgacttcaccatagaatttcccta 13800638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 3877623 - 3877560
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccctaaatataa 90  Q
    |||||||||||||||| |||||| |||||||||  |||||||||||||||||||| ||||||||    
T  3877623 tgtagggtaacttcaccgaaaaaatcaattgaacgacttcaccatagaatttccccaaatataa 3877560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 30089223 - 30089272
Alignment:
Q  34 taacttcactgaaaaagtcaattgaagaacttcaccatagaatttcccta 83  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  30089223 taacttcactgaaaaagtcaattgaaagacttcaccatagaattttccta 30089272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 533734 - 533790
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttcccta 83  Q
    |||||| ||||||| ||||||||||||||| ||  ||||||||||||||||||||||    
T  533734 tgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccta 533790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 1786540 - 1786484
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatag-aatttccct 82  Q
    |||| |||||||||||  ||||||||||||||| ||||||||||||| |||||||||    
T  1786540 tgtatggtaacttcacaaaaaaagtcaattgaacaacttcaccatagtaatttccct 1786484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 15530112 - 15530060
Alignment:
Q  29 tagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  15530112 tagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaatttccc 15530060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 24226924 - 24226867
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccctaa 84  Q
    |||||| ||||||||  |||||||||||||||| ||||||||||||||||||||||||    
T  24226924 tgtaggataacttcatcgaaaaagtcaattgaacaacttcaccatagaatttccctaa 24226867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 42063057 - 42063002
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccct 82  Q
    |||||| |||||||||  |||||||||||||||  |||||||||||||||||||||    
T  42063057 tgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttccct 42063002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 45988170 - 45988115
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccct 82  Q
    |||||| ||||||||| ||||||||||||||||  ||||||||||| |||||||||    
T  45988170 tgtaggataacttcaccgaaaaagtcaattgaatgacttcaccataaaatttccct 45988115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 47028154 - 47028101
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttcc 80  Q
    |||||| |||||||||  |||||||||||||||  |||||||||||||||||||    
T  47028154 tgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttcc 47028101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 20135461 - 20135516
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccct 82  Q
    |||||| ||||| | ||||||||||||||| ||  |||||||||||||||||||||    
T  20135461 tgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaatttccct 20135516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 55917455 - 55917405
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatt 77  Q
    |||||| ||||||| ||||||||||||||| ||  ||||||||||||||||    
T  55917455 tgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatt 55917405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 28683105 - 28683160
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttcccta 83  Q
    |||||| ||||||||| ||||| ||||||| ||| ||||||||||||||||| ||||    
T  28683105 tgtaggataacttcaccgaaaa-gtcaatttaaggacttcaccatagaattttccta 28683160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 49410551 - 49410602
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaattt 78  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  49410551 tgtagggtaacttcaccgaaaaagtcatttgaagaacttcaccatagaattt 49410602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 22105446 - 22105398
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaa 75  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  22105446 tgtaggataacttcaccgaaaaagtcaattgaagaacttcatcatagaa 22105398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 45319654 - 45319603
Alignment:
Q  34 taacttcactgaaaaagtcaattgaagaacttcaccatagaatttccctaaa 85  Q
    |||||||||  |||||||||||||||  ||||||||||||||||||||||||    
T  45319654 taacttcaccaaaaaagtcaattgaatgacttcaccatagaatttccctaaa 45319603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 47036294 - 47036349
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccct 82  Q
    |||| |||||||||| |||| ||||||||||||  |||||||||||||||||||||    
T  47036294 tgtatggtaacttcattgaagaagtcaattgaatgacttcaccatagaatttccct 47036349  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 12983570 - 12983627
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccctaa 84  Q
    |||||| ||||||| ||||||||||||||| |   |||||||||||||||||||||||    
T  12983570 tgtaggataacttctctgaaaaagtcaatttattgacttcaccatagaatttccctaa 12983627  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 45346318 - 45346263
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccct 82  Q
    |||||| ||||||| ||||||||||||||| ||  |||||||| ||||||||||||    
T  45346318 tgtaggataacttctctgaaaaagtcaatttaatgacttcaccgtagaatttccct 45346263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 39249545 - 39249594
Alignment:
Q  29 tagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaattt 78  Q
    ||||| ||||||||  ||||||| |||||||| |||||||||||||||||    
T  39249545 tagggcaacttcaccaaaaaagttaattgaaggacttcaccatagaattt 39249594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 52382674 - 52382618
Alignment:
Q  25 gctgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||||| | ||||||| ||| |||||| || || |||||||||||||||||||||    
T  52382674 gctgtaggattacttcaccgaagaagtcattttaacaacttcaccatagaatttccc 52382618  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 7091139 - 7091193
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  7091139 tgtagggtaacttcaccgaaaaagtcaattgaacgacttcaccatagaatttccc 7091193  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 33751560 - 33751506
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  33751560 tgtagggtaacttcaccgaaaaagtcaattgaacgacttcaccatagaatttccc 33751506  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 16431901 - 16431957
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttcccta 83  Q
    |||||| ||||||| ||||||||||||||| ||  ||||||||||||||||||||||    
T  16431901 tgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccta 16431957  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 37080755 - 37080809
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||| ||||||||   ||||||||||||||| |||||||||||||||||||||    
T  37080755 tgtaggataacttcatcaaaaaagtcaattgaataacttcaccatagaatttccc 37080809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 37259725 - 37259671
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||| ||||||| ||||||||||||||| ||  ||||||||||||||||||||    
T  37259725 tgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccc 37259671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 17692644 - 17692695
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaattt 78  Q
    |||||| ||||||| ||||||||||||||| ||  |||||||||||||||||    
T  17692644 tgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 17692695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 30778346 - 30778295
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaattt 78  Q
    ||||| |||||||||  ||||||||||||| |||||||||||| ||||||||    
T  30778346 tgtagagtaacttcatcgaaaaagtcaattaaagaacttcaccgtagaattt 30778295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 14805628 - 14805574
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||| ||||||| |||||||| |||||| ||  ||||||||||||||||||||    
T  14805628 tgtaggataacttctctgaaaaattcaatttaatgacttcaccatagaatttccc 14805574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 1976 - 2032
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttcccta 83  Q
    |||||| ||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  1976 tgtaggataacttcactgaaaaagtcaattgaatgacttcaccgtagaatttcccta 2032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 7124388 - 7124332
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttcccta 83  Q
    |||||| ||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  7124388 tgtaggataacttcactgaaaaagtcaattgaatgacttcaccgtagaatttcccta 7124332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 945126 - 945177
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaattt 78  Q
    ||||| |||||||||   |||||||||||||| |||||||||||||||||||    
T  945126 tgtagagtaacttcatcaaaaaagtcaattgaggaacttcaccatagaattt 945177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 12477921 - 12477972
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaattt 78  Q
    |||| ||| ||||||| | ||||||||||||||||||||||||||| |||||    
T  12477921 tgtatggttacttcaccggaaaagtcaattgaagaacttcaccataaaattt 12477972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 12945695 - 12945752
Alignment:
Q  25 gctgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccct 82  Q
    |||||||||| ||||||| |||||||||| ||    ||||||||||||||||||||||    
T  12945695 gctgtagggttacttcaccgaaaaagtcattttggcaacttcaccatagaatttccct 12945752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 29245302 - 29245357
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccct 82  Q
    |||||| ||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  29245302 tgtaggataacttctctgaaaaagtcaatttaataacttcaccatagaatttccct 29245357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 6444191 - 6444245
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||| ||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  6444191 tgtaggataacttcaccgaaaaagtcaattgaatgacttcaccatagaatttccc 6444245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 34095881 - 34095935
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||| |||||||||  |||||||||||||||  ||||||||||||||||||||    
T  34095881 tgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttccc 34095935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 45974473 - 45974527
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||| ||||||| ||||||||||||||| ||  ||||||||||||||||||||    
T  45974473 tgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccc 45974527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 47329694 - 47329749
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccct 82  Q
    |||||| ||||||||   ||||||||||||||| |||||||||||| |||||||||    
T  47329694 tgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaaatttccct 47329749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 8419406 - 8419440
Alignment:
Q  44 gaaaaagtcaattgaagaacttcaccatagaattt 78  Q
    ||||||||||||||||||||||||||||| |||||    
T  8419406 gaaaaagtcaattgaagaacttcaccataaaattt 8419440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 25146 - 25092
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||| ||||||| ||||||||||||||| ||  ||||||||||||||||||||    
T  25146 tgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttccc 25092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 7033 - 6980
Alignment:
Q  27 tgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttcc 80  Q
    |||||| |||||||||  |||||||||||||||  |||||||||||||||||||    
T  7033 tgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaatttcc 6980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 6687 - 6631
Alignment:
Q  25 gctgtagggtaacttcactgaaaaagtcaattgaagaacttcaccatagaatttccc 81  Q
    |||||||| | ||||||| ||| |||||| || || |||||||||||||||||||||    
T  6687 gctgtaggattacttcaccgaagaagtcattttaacaacttcaccatagaatttccc 6631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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