View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18991_low_17 (Length: 234)
Name: NF18991_low_17
Description: NF18991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18991_low_17 |
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| [»] chr1 (5 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 74 - 234
Target Start/End: Original strand, 32593184 - 32593344
Alignment:
| Q |
74 |
atgaatggttttcaatgtttattttttaagtgctggctgaaattctggatggtgtaggtacaagaggctaactgggaattatacaagaaacaaaaagaat |
173 |
Q |
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||||||| ||||||||||||||||||||||| |||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32593184 |
atgaatgattttcaatgtttattttttaagtactggttgaaattttggatggtttaggtacaagaggctaactgggaattatacaagaaacaaaaagaat |
32593283 |
T |
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| Q |
174 |
cagaagcaattctgtatgagaagaaggcagagggagaagcacagaaagcattggcagatgc |
234 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32593284 |
cagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcattggcagatgc |
32593344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 234
Target Start/End: Complemental strand, 51824107 - 51823947
Alignment:
| Q |
74 |
atgaatggttttcaatgtttattttttaagtgctggctgaaattctggatggtgtaggtacaagaggctaactgggaattatacaagaaacaaaaagaat |
173 |
Q |
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||||||| ||||||||||||||||||||||| |||| |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51824107 |
atgaatgattttcaatgtttattttttaagtactggttgaaattctgaatggtttatgtacaagaggctaactgggaattatacaagaaacaaaaagaag |
51824008 |
T |
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| Q |
174 |
cagaagcaattctgtatgagaagaaggcagagggagaagcacagaaagcattggcagatgc |
234 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51824007 |
cagaagcaattctgtacgagaagaaggcagaggcagaagcacagaaagcattggcagatgc |
51823947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 128 - 234
Target Start/End: Complemental strand, 31527163 - 31527057
Alignment:
| Q |
128 |
taggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagcaattctgtatgagaagaaggcagagggagaagcacagaaagcattgg |
227 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31527163 |
taggtacaagaggctaactgggaattatacaggaaacaaaaagaagcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcattgt |
31527064 |
T |
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| Q |
228 |
cagatgc |
234 |
Q |
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||||||| |
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| T |
31527063 |
cagatgc |
31527057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 37030511 - 37030396
Alignment:
| Q |
119 |
tggatggtgtaggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagcaattctgtatgagaagaaggcagagggagaagcacaga |
218 |
Q |
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|||||||||||||| ||||| || |||||||| | ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37030511 |
tggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacaga |
37030412 |
T |
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| Q |
219 |
aagcattggcagatgc |
234 |
Q |
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|||||| ||||||||| |
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| T |
37030411 |
aagcatcggcagatgc |
37030396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 32593084 - 32593128
Alignment:
| Q |
9 |
gaagaatatggaattatcattaccaaccaaaccttgtcatttttt |
53 |
Q |
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| T |
32593084 |
gaagaatatggaattattactaccaaccaaaccttgtcaattttt |
32593128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 82 - 232
Target Start/End: Complemental strand, 49211911 - 49211761
Alignment:
| Q |
82 |
ttttcaatgtttattttttaagtgctggctgaaattctggatggtgtaggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagca |
181 |
Q |
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||||||| ||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
49211911 |
ttttcaaagttcattttttaagtgccggttgaaattctggatgctgtaggtacaagaggctaactgggaattatacaagaaacaaaaggaggcagaagca |
49211812 |
T |
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| Q |
182 |
attctgtatgagaagaaggcagagggagaagcacagaaagcattggcagat |
232 |
Q |
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||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
49211811 |
attctgtttgagaagaaggcagaggcagaagcacaaaaagcattggcagat |
49211761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 82 - 232
Target Start/End: Complemental strand, 49207337 - 49207187
Alignment:
| Q |
82 |
ttttcaatgtttattttttaagtgctggctgaaattctggatggtgtaggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagca |
181 |
Q |
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|||| |||||||| ||| ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
49207337 |
tttttaatgtttactttataagtgctgattgaaattctggatgctctaggtacaagaggctaactgggaattatacaagaaacaaaaagaggctgaagca |
49207238 |
T |
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| Q |
182 |
attctgtatgagaagaaggcagagggagaagcacagaaagcattggcagat |
232 |
Q |
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||||||||||||||||||||||||| |||||| || ||||||||||||||| |
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| T |
49207237 |
attctgtatgagaagaaggcagaggcagaagcgcaaaaagcattggcagat |
49207187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 111 - 231
Target Start/End: Complemental strand, 49191064 - 49190944
Alignment:
| Q |
111 |
tgaaattctggatggtgtaggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagcaattctgtatgagaagaaggcagagggaga |
210 |
Q |
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|||||||||||||||| ||||||||||| || |||||||| | |||||||||||||| || ||||||||||||||||||||||||||||||||| ||| |
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| T |
49191064 |
tgaaattctggatggtataggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctgtatgagaagaaggcagaggcaga |
49190965 |
T |
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| Q |
211 |
agcacagaaagcattggcaga |
231 |
Q |
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||||||||||||||| ||||| |
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| T |
49190964 |
agcacagaaagcattagcaga |
49190944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 49187365 - 49187250
Alignment:
| Q |
119 |
tggatggtgtaggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagcaattctgtatgagaagaaggcagagggagaagcacaga |
218 |
Q |
| |
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|||||||||||||||||||| || |||||||| | ||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49187365 |
tggatggtgtaggtacaagaagcaaactgggagctgtacaagaaacagaaagagactgaagcaattctgtatgagaagaaggcagaggcagaagcacaga |
49187266 |
T |
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| Q |
219 |
aagcattggcagatgc |
234 |
Q |
| |
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|||| | ||||||||| |
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| T |
49187265 |
aagcgtcggcagatgc |
49187250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 49202347 - 49202242
Alignment:
| Q |
117 |
tctggatggtgtaggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagcaattctgtatgagaagaaggcagagggagaagcaca |
216 |
Q |
| |
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|||||||||||||||||||||| || |||||||| | |||||||| || ||||| | ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49202347 |
tctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaaggcagaggcagaagcaca |
49202248 |
T |
|
| Q |
217 |
gaaagc |
222 |
Q |
| |
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|||||| |
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| T |
49202247 |
gaaagc |
49202242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 26756349 - 26756228
Alignment:
| Q |
113 |
aaattctggatggtgtaggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagcaattctgtatgagaagaaggcagagggagaag |
212 |
Q |
| |
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||||||||||| ||| ||| ||||||||| |||||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| |
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| T |
26756349 |
aaattctggatagtgcaggcacaagaggcaaactgggagctgtacaagaaacaaaaagaggcagaagcaattctgtatgagaagaagacagaggcagaag |
26756250 |
T |
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| Q |
213 |
cacagaaagcattggcagatgc |
234 |
Q |
| |
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|||||| |||||||||| |||| |
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|
| T |
26756249 |
cacagatagcattggcaaatgc |
26756228 |
T |
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