View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18991_low_2 (Length: 477)
Name: NF18991_low_2
Description: NF18991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18991_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 14 - 464
Target Start/End: Complemental strand, 5347410 - 5346960
Alignment:
| Q |
14 |
cacagacaccaccacaaaccaacctcacacaaaccctaatccacaaaatcctctcaaacccatcacttcacatttctcacaaactcaatttcttcaattc |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5347410 |
cacaaacaccaccacaaaccaacctcacacaaaccctaatccacaaaatcctctcaaacccatcacttcacatttctcacaaactcaatttcttcaattc |
5347311 |
T |
|
| Q |
114 |
caacaacaacattcatcattcttcactctcttactcactcattttcaacaatctttgtaaccccaaaacccctttttcactcctccatcaacacctccct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5347310 |
caacaacaacattcatcattcttcactctcttactcactcattttcaacaatctttgtaaccccaaaacccctttttcactcctccatcaacacctccct |
5347211 |
T |
|
| Q |
214 |
caccttcttcattgcatgaaacaaaatggtattgttttcgattcgaattcgttcaataccctccttaattttcttatcaaatttggtgtttctcataaca |
313 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5347210 |
caccttcttcattccatgaaacaaaatggtattgttttcgattcgaattcgttcaataccctccttaattttcttatcaaatttggtgtttctcataaca |
5347111 |
T |
|
| Q |
314 |
ataatagtaaaaactttcactttgttattgatattttggattatattcaaacacaaaatcttcatcctgttggtactacaccttttatttataattctct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5347110 |
ataatagtaaaaactttcactttgttattgatattttggattatattcaaacacaaaatcttcatcctgttgatactacaccttttatttataattctct |
5347011 |
T |
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| Q |
414 |
gttaattgcttctataaagaataatcaaattccacttgctttgtcaatttt |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5347010 |
gttaattgcttctataaagaataatcaaattccacttgctttgtcaatttt |
5346960 |
T |
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