View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18991_low_5 (Length: 370)
Name: NF18991_low_5
Description: NF18991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18991_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 352
Target Start/End: Complemental strand, 47333592 - 47333247
Alignment:
| Q |
7 |
ggagcagagacaggtgaagcagaagctttaacaacattaattgaaagtttttgaccagctgaacaatgacctggaacggcacaaatgaagttctgttgtc |
106 |
Q |
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| T |
47333592 |
ggagcagaaacaggtgaagcagaagctttaacaacgttaattgaaagtttttgaccagctgaacaatgacctggaactgcacaaatgaagttctgttgtc |
47333493 |
T |
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| Q |
107 |
ctgtttcgttcaaagttaccgtagctggactgtttgttaaggtgaaaagtgtgtttgctccattgcaactatcgtaagctgtttttgttaccttagccac |
206 |
Q |
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| T |
47333492 |
ctgtttcgttcaaagttacggtagctggactgtttgttaaggtgaaaagtgtgtttgctccattgcaactatcgtaagctgtttttgttaccttagccac |
47333393 |
T |
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| Q |
207 |
atcatgttgtccacttgcataattgaacactgcaaaatcaagtttacgttaaaacaatttttatataaacgaatcaaaacgacaagggcctgaaatatat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47333392 |
atcatgttgtccacttgcataattgaacactgcaaaatcaagtttaccttaaaacaatttttatataaacgaatcaaaacgacaagggtctgaaatatat |
47333293 |
T |
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| Q |
307 |
tatttcttacctagagtgtcgcctacggtgaaggttttgttggaag |
352 |
Q |
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| T |
47333292 |
tatttcttacctagagtgtcgcctacggtgaaggttttgttggaag |
47333247 |
T |
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