View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18991_low_6 (Length: 366)
Name: NF18991_low_6
Description: NF18991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18991_low_6 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: scaffold0252 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 22577 - 22234
Alignment:
| Q |
10 |
acatcatcaaaacctaaactaaagagtaaccacaacaaaattataagaacaataatactaaaattcctccaaacttttatctatccacttcattgttgtc |
109 |
Q |
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| T |
22577 |
acatcatcaaaacctaaactaaagagtaaccacaacaaaattataagaacaataatactaaaattcctccaaacttttatc----cacttcattgttgtc |
22482 |
T |
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| Q |
110 |
attagtccaccctcgagtgtggaaatcgtatgtgtttgattagcaattgtttggttttgtgtaccaatcaatttgttttgtgcatcaattattcttttat |
209 |
Q |
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| T |
22481 |
attagtccaccctcgagtgtggaaatcgtatgtgtttgattagcaattgtttggttttgtgtatcaatcaatttgttttgtgcatcaattattcttttat |
22382 |
T |
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| Q |
210 |
gctcttcaacatattttccatattatgaactcacattggaagcgaaacaggttccactaaactatattctgtttatcaagcatgtacatacatccccacc |
309 |
Q |
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| T |
22381 |
gttcttcaacatattttccatattatgaactcacattggaagtgaaacaggttccactaaactatattctatttatcaagcatgtacatacatccacatc |
22282 |
T |
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| Q |
310 |
atttagaaaaacataaaaactgggttaattaaccctttttcaataaat |
357 |
Q |
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| T |
22281 |
atttagaaaaacataaaaactgggttaattaaacctttttcaataaat |
22234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 34660183 - 34660334
Alignment:
| Q |
12 |
atcatcaaaacctaaactaaagagtaaccacaacaaaattataagaacaataatactaaaattcctccaaacttttatctatccacttcattgttgtcat |
111 |
Q |
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| T |
34660183 |
atcatcaaaacctaaaccaaggactaaccacggcaaaattataagaacaaca---ctaaaattcctccaaacttttatc----cacttcattgttgtcat |
34660275 |
T |
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| Q |
112 |
tagtccaccctcgagtgtggaaatcgtatgtgtttgattagcaattgtttggttttgtg |
170 |
Q |
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| T |
34660276 |
tagtccaccctcaagtgtgaaaatcttatgtgtttgattaacaattgtttggttttgtg |
34660334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 216 - 357
Target Start/End: Complemental strand, 43436920 - 43436778
Alignment:
| Q |
216 |
caacatattttccatattatgaa-ctcacattggaagcgaaacaggttccactaaactatattctgtttatcaagcatgtacatacatccccaccattta |
314 |
Q |
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| T |
43436920 |
caacatattttacatattatgaaactcatattggaagcgaaacaggtgccactaaaatatattctgtttatcaagcatgtacatgcatccacatccttta |
43436821 |
T |
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| Q |
315 |
gaaaaacataaaaactgggttaattaaccctttttcaataaat |
357 |
Q |
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| T |
43436820 |
gaaaaatataaaaactggattaattaaacctttttaaataaat |
43436778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 26864544 - 26864641
Alignment:
| Q |
91 |
tatccacttcattgttgtcattagtccaccctcgagtgtggaaatcgtatgtgtttgattagcaattgtttggttttgtgtaccaatcaatttgtttt |
188 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| ||||||||||||| || | |||||| |||||||| |
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| T |
26864544 |
tatccacttcattgttgtcattagtccaccctcaagtgtggaaatcttatgagtttgattagtaattgtttggtttaatgcatcaatcagtttgtttt |
26864641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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