View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18991_low_7 (Length: 288)
Name: NF18991_low_7
Description: NF18991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18991_low_7 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 32593336 - 32593596
Alignment:
| Q |
1 |
ggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacaattggacaagctcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |
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|
| T |
32593336 |
ggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacacttgggaatgctcaa |
32593435 |
T |
|
| Q |
101 |
ggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgtttcaagagatggcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32593436 |
ggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggcta |
32593535 |
T |
|
| Q |
201 |
agattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggagg |
261 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32593536 |
agatcaatgctgaggcagtacatggacttgaacctaagattagtatttggactaatggagg |
32593596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 51823955 - 51823688
Alignment:
| Q |
1 |
ggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacaattggacaagctcaa |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| | |||||| |
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|
| T |
51823955 |
ggcagatgcaacattttatgcgtgcaagcaagcagctgaagcagatctatacgcaaagaaaaaagaggcagaggggattgtgacacttggaaatgctcaa |
51823856 |
T |
|
| Q |
101 |
ggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgtttcaagagatggcta |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51823855 |
ggagcgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggcta |
51823756 |
T |
|
| Q |
201 |
agattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtgacaat |
268 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51823755 |
agattaatgctgaggcagtacgtggacttgaacctaagattagtatttggactaatggaggggacaat |
51823688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 268
Target Start/End: Complemental strand, 31527063 - 31526798
Alignment:
| Q |
3 |
cagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacaattggacaagctcaagg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||| |||| | |||||||| |
|
|
| T |
31527063 |
cagatgcaacattttatgcgcgcaagcaagcagccgaagcggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaagg |
31526964 |
T |
|
| Q |
103 |
agtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgtttcaagagatggctaag |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31526963 |
agtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaag |
31526864 |
T |
|
| Q |
203 |
attaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtgacaat |
268 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31526863 |
attaatgctgaggcggtacgtggacttgaacctaagattagtatttggactaatggaggtgacaat |
31526798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 37030404 - 37030141
Alignment:
| Q |
1 |
ggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacaattggacaagctcaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||| |||||||||||||| |
|
|
| T |
37030404 |
ggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagggaattgtgacagttggacaagctcaa |
37030305 |
T |
|
| Q |
101 |
ggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgtttcaagagatggcta |
200 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
37030304 |
ggggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggattacttgatgataaatggtggcatgtttcaagagattgcta |
37030205 |
T |
|
| Q |
201 |
agattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtga |
264 |
Q |
| |
|
||||||| || |||||| || | |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
37030204 |
agattaacgccgaggcaatacgaggacttgagcctaagattagtatttggactaatgggggtga |
37030141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 49187258 - 49186995
Alignment:
| Q |
1 |
ggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacaattggacaagctcaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||| |||||||||||||| |
|
|
| T |
49187258 |
ggcagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagggaattgtgacacttggacaagctcaa |
49187159 |
T |
|
| Q |
101 |
ggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgtttcaagagatggcta |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||| |||| |
|
|
| T |
49187158 |
ggagcgtatgtaagtacacttctcaatgcacttggaaacgactacacagctgtaagggattacttgatgataaatggtgacatgtttcaagagattgcta |
49187059 |
T |
|
| Q |
201 |
agattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtga |
264 |
Q |
| |
|
|||||||||| |||||| || | |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
49187058 |
agattaatgccgaggcaatacgcggacttgagcctaagattagtatttggactaatggtggtga |
49186995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 49202237 - 49201981
Alignment:
| Q |
2 |
gcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacaattggacaagctcaag |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||||| |
|
|
| T |
49202237 |
gcagatgcaacattttatgcttgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaag |
49202138 |
T |
|
| Q |
102 |
gagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgtttcaagagatggctaa |
201 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
49202137 |
gagcgtatgtaagtacacttctgaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggtggcatgtttcaagagattgctaa |
49202038 |
T |
|
| Q |
202 |
gattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatgg |
258 |
Q |
| |
|
||||||||| ||||||||| | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
49202037 |
gattaatgccgaggcagtacgcggacttgagcctaagattagtatttggactaatgg |
49201981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 49207193 - 49206930
Alignment:
| Q |
1 |
ggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacaattggacaagctcaa |
100 |
Q |
| |
|
||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| | |||||| |
|
|
| T |
49207193 |
ggcagattccacattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggattatgacacttgggaatgctcaa |
49207094 |
T |
|
| Q |
101 |
ggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgtttcaagagatggcta |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
49207093 |
ggagcgtatgtaagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggtggcatgtttcaagagattgcta |
49206994 |
T |
|
| Q |
201 |
agattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtga |
264 |
Q |
| |
|
|||||||||| ||||| ||| | |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
49206993 |
agattaatgccgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtga |
49206930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 49211767 - 49211504
Alignment:
| Q |
1 |
ggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacaattggacaagctcaa |
100 |
Q |
| |
|
||||||| | ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| | |||||| |
|
|
| T |
49211767 |
ggcagattccacattttatgctcgcaagcaagaagctgaagcagagctgtacgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaa |
49211668 |
T |
|
| Q |
101 |
ggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgtttcaagagatggcta |
200 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
49211667 |
ggagcgtatgtaagtacacttctgaatgcacttggaaacaactatacagcagtaagggattacttgatgataaatggtggcatgtttcaagagattgcta |
49211568 |
T |
|
| Q |
201 |
agattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtga |
264 |
Q |
| |
|
|||||||||||||||| ||| | |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
49211567 |
agattaatgctgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtga |
49211504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 2 - 264
Target Start/End: Complemental strand, 49190948 - 49190686
Alignment:
| Q |
2 |
gcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacaattggacaagctcaag |
101 |
Q |
| |
|
||||| |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||| |||| | ||||||| |
|
|
| T |
49190948 |
gcagacgcaacattttatgctcgcacgcaagcagctgaagcagagctatatgcaaagaaaaaggaggcagagggaattgtgacacttgggaatgctcaag |
49190849 |
T |
|
| Q |
102 |
gagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgtttcaagagatggctaa |
201 |
Q |
| |
|
| |||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
49190848 |
gggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaagggatttcttgatgataaatggtggcatgtttcaagagatcgctaa |
49190749 |
T |
|
| Q |
202 |
gattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatggaggtga |
264 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
49190748 |
gattaatgctgaggcagtacgcggacttgagcctaagattagtatttggactaatggtggtga |
49190686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 26756236 - 26755979
Alignment:
| Q |
1 |
ggcagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacaattggacaagctcaa |
100 |
Q |
| |
|
|||| |||||||||||||||| || || |||||||| |||||||||||||| |||||||| || ||||| || ||||| |||||| |||| | | |||| |
|
|
| T |
26756236 |
ggcaaatgcaacattttatgctcgtaaacaagcagccgaagcagagctatatgcaaagaagaaggaggcggaggggatcgtgacacttgggaatggtcaa |
26756137 |
T |
|
| Q |
101 |
ggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggcggcatgtttcaagagatggcta |
200 |
Q |
| |
|
|| |||| ||||||||| |||||||| ||||||||| || || |||||| ||||||| ||||||||||||||||| |||||||||| ||| || || | |
|
|
| T |
26756136 |
ggggtgtgtgtaagtacccttctcaacgcacttggaggtgattatacagctgtaagggactacttgatgataaatggtggcatgtttcgagatattgcga |
26756037 |
T |
|
| Q |
201 |
agattaatgctgaggcagtaagtggacttgaacctaagattagtatttggactaatgg |
258 |
Q |
| |
|
|||||||||||||||| || | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26756036 |
agattaatgctgaggctatacgcggacttgaacctaagattagtatttggactaatgg |
26755979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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