View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18992_high_1 (Length: 613)
Name: NF18992_high_1
Description: NF18992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18992_high_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 585; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 8 - 613
Target Start/End: Complemental strand, 50835016 - 50834411
Alignment:
| Q |
8 |
ataattctaaacaaccatgaaaaccattaaccactataaattacacagaaatctggataaagtgttcagaaaaatgtttgtactcatcattcatgacccn |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50835016 |
ataattctaaacaaccatgaaaaccattaaccactataaattacacagaaatctggataaagtgttcagaaaaatgtttgtactcatcattcatgaccca |
50834917 |
T |
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| Q |
108 |
nnnnnntaatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834916 |
aaaaaataatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
50834817 |
T |
|
| Q |
208 |
tgcaagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatat |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834816 |
tgcaagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatat |
50834717 |
T |
|
| Q |
308 |
tgggattgactaataattatgtaaatagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834716 |
tgggattgactaataattatgtaaatagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggta |
50834617 |
T |
|
| Q |
408 |
caggagaatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaa |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834616 |
caggagaatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaa |
50834517 |
T |
|
| Q |
508 |
attacacacctcttgttcttacaaaccgagaaagcaaattcattccccaagtgagggcataagaagaagggtttttgtgtgttgaagatcagaagaagaa |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834516 |
attacacacctcttgttcttacaaaccgagaaagcaaattcattccccaagtgagggcataagaagaagggtttttgtgtgttgaagatcagaagaagaa |
50834417 |
T |
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| Q |
608 |
tagggt |
613 |
Q |
| |
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|||||| |
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| T |
50834416 |
tagggt |
50834411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 8 - 613
Target Start/End: Original strand, 50840837 - 50841442
Alignment:
| Q |
8 |
ataattctaaacaaccatgaaaaccattaaccactataaattacacagaaatctggataaagtgttcagaaaaatgtttgtactcatcattcatgacccn |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50840837 |
ataattctaaacaaccatgaaaaccattaaccactataaattacacagaaatctggataaagtgttcagaaaaatgtttgtactcatcattcatgaccca |
50840936 |
T |
|
| Q |
108 |
nnnnnntaatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50840937 |
aaaaaataatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
50841036 |
T |
|
| Q |
208 |
tgcaagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841037 |
tgcaagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatat |
50841136 |
T |
|
| Q |
308 |
tgggattgactaataattatgtaaatagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841137 |
tgggattgactaataattatgtaaatagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggta |
50841236 |
T |
|
| Q |
408 |
caggagaatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaa |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841237 |
caggagaatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaa |
50841336 |
T |
|
| Q |
508 |
attacacacctcttgttcttacaaaccgagaaagcaaattcattccccaagtgagggcataagaagaagggtttttgtgtgttgaagatcagaagaagaa |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841337 |
attacacacctcttgttcttacaaaccgagaaagcaaattcattccccaagtgagggcataagaagaagggtttttgtgtgttgaagatcagaagaagaa |
50841436 |
T |
|
| Q |
608 |
tagggt |
613 |
Q |
| |
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|||||| |
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| T |
50841437 |
tagggt |
50841442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 11729886 - 11729626
Alignment:
| Q |
8 |
ataattctaaacaaccatgaaaaccattaaccactataaattacacagaaatctggataaagtgttcagaaaaatgtttgtactcatcattcatgacccn |
107 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729886 |
ataatactaaacaaccatgaaaaccattaaccactataaattacaaagaaatctggataaagtgttcagaaaaatgtttgtactcatcattcatgaccta |
11729787 |
T |
|
| Q |
108 |
nnnnnntaatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
207 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729786 |
aaaaaataatgtaacaaaataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
11729687 |
T |
|
| Q |
208 |
tgcaagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttca |
268 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729686 |
tgcaagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttca |
11729626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 23740198 - 23739938
Alignment:
| Q |
8 |
ataattctaaacaaccatgaaaaccattaaccactataaattacacagaaatctggataaagtgttcagaaaaatgtttgtactcatcattcatgacccn |
107 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23740198 |
ataatactaaacaaccatgaaaaccattaaccactataaattacaaagaaatctggataaagtgttcagaaaaatgtttgtactcatcattcatgaccta |
23740099 |
T |
|
| Q |
108 |
nnnnnntaatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
207 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23740098 |
aaaaaataatgtaacaaaataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatag |
23739999 |
T |
|
| Q |
208 |
tgcaagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttca |
268 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23739998 |
tgcaagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttca |
23739938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 559 - 587
Target Start/End: Original strand, 43618669 - 43618697
Alignment:
| Q |
559 |
tgagggcataagaagaagggtttttgtgt |
587 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
43618669 |
tgagggcataagaagaagggtttttgtgt |
43618697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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