View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18992_high_14 (Length: 295)

Name: NF18992_high_14
Description: NF18992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18992_high_14
NF18992_high_14
[»] chr4 (1 HSPs)
chr4 (1-291)||(46502818-46503109)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 46503109 - 46502818
Alignment:
Q  1 tcttctttttagaggtgagtttagtgggaataaagttggtttatgtgagagaaagagacaaaagaaaaagtatgagataaagcagagagaattgtaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46503109 tcttctttttagaggtgagtttagtgggaataaagttggtttatgtgagagaaagagacaaaagaaaaagtatgagataaagcagagagaattgtaactt 46503010  T
Q  101 ccttacaaagaagtaagaaccaatggaaaacatagggctaaatagtctttttcatccttaaatgttaaat-agtacatacatatattaaaattacaaaat 199  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46503009 ccttacaaagaagcaagaaccaatggaaaacatagggctaaatagtctttttcatccttaaatgttaaataagtacatacatatattaaaattacaaaat 46502910  T
Q  200 catatgtaaatttgtctttgnnnnnnnnaagtcatttgaattctcaagtcatgtgtttttagttagttagtttttgttatccctttgcttct 291  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||    
T  46502909 catatgtaaatttgtctttgttttttttaagtcatttgaattctcaagtcatgtgtttttagttggctagtttttgttatccctttgattct 46502818  T

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