View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18992_high_3 (Length: 545)
Name: NF18992_high_3
Description: NF18992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18992_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Complemental strand, 54635430 - 54634901
Alignment:
| Q |
1 |
tgtaaaagctggtgtggggactgccgataaatcatatccaaagtcctatgctcgccactataaaccttccgataaatcaacaatgcagctaacatgaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54635430 |
tgtaaaagctggtgtggggactgccgataaatcatatccaaagtcctatgctcgccactataaaccttccgataaatcaacaatgcagctaacatgaaag |
54635331 |
T |
|
| Q |
101 |
ccataacgggccaaccactacgttcacaatgcatcaacaacacattgtgttgaccaagtgaaagccaactttcactagaccttaaaaagtggtgaatgag |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54635330 |
ccataacgggccaaccaccacgttcacaatgcatcaacaacacattgtgttgaccaagtgaaagccaactttcactagaccttaaaaagtggtgaatgag |
54635231 |
T |
|
| Q |
201 |
ctccattttaagcacaggacaaccttcataatgcctaggataatccattatagtaatgtcatactcagatattatatttgccatcaaactcttggtctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54635230 |
ctccattttaagcacaggacaaccttcataatgcctaggataatccattatagtaatgtcatactcagatattatatttgccatcaaactcttggtctct |
54635131 |
T |
|
| Q |
301 |
tcctcgcgaaaattgaaaaccaaaatagaagcatcaggcacattctctctaagctgacctactataccatccatatacactttatacttctcttcattcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54635130 |
tcctcgcgaaaattgaaaaccaaaatagaagcatcaggcacattctctctaagctgacctactataccatccatatacactttatacttctcttcattcc |
54635031 |
T |
|
| Q |
401 |
aagcttccgttgtgaaacagcaatcaaaaactacattcacacaccaatgttaattttaatttatttttccaatgagaaaaggagagatgcattgtcagcg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54635030 |
aagcttccgttgtgaaacagcaatcaaaaactacattcacacaccaatgttaattttaatttatttttccaatgagaaaaggagagatgcattgtcagcg |
54634931 |
T |
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| Q |
501 |
taaactagttttacactgacattgaaaatt |
530 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
54634930 |
taaactagttttacactgacattgaaaatt |
54634901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 521
Target Start/End: Complemental strand, 21915068 - 21915021
Alignment:
| Q |
474 |
gagaaaaggagagatgcattgtcagcgtaaactagttttacactgaca |
521 |
Q |
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||||||||| || |||||||||||| |||||||||||||||||||||| |
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| T |
21915068 |
gagaaaaggggatatgcattgtcagtgtaaactagttttacactgaca |
21915021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 513
Target Start/End: Complemental strand, 37034796 - 37034754
Alignment:
| Q |
471 |
aatgagaaaaggagagatgcattgtcagcgtaaactagtttta |
513 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
37034796 |
aatgagaaaaggagacatgcattgtcaatgtaaactagtttta |
37034754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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