View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18992_high_4 (Length: 481)
Name: NF18992_high_4
Description: NF18992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18992_high_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 69 - 481
Target Start/End: Complemental strand, 54635932 - 54635520
Alignment:
| Q |
69 |
attttatgaggttccaagtcatctcaggaacatagcaactcgcagattataacaattgtttgccacagtaacacctagtttatttttatctgttaaaaat |
168 |
Q |
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| T |
54635932 |
attttatgaggttccaagtcatctcaggaacatagcaactcgcagattttaacaattgtttgccacggtaacacctagtttatttttatctgttaaaaat |
54635833 |
T |
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| Q |
169 |
aattatctactgattgtctttgagatttcgtaatgcatgcaatgagtgcgtaattccttcaaattaatggctccaataaaatcattaacatacaaaaagc |
268 |
Q |
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| T |
54635832 |
aattatctaccgattgtctttgagattttgtaatgcatgcaatgagtgtgtaattccttcaaattaatggctccaataaaatcattaacatacaaaaagc |
54635733 |
T |
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| Q |
269 |
taaaatatgagggaaaagcatgaggtaaattcacctgcttgtaagcccggacatttttacttctctttggcattgagtacaacattttaggacttttatc |
368 |
Q |
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| T |
54635732 |
taaaatatgagggaaaagcatgaggtaaattcacctgcttgtaagcccggacatttttacttctctttggcattgagtacagcattttaggacttttatc |
54635633 |
T |
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| Q |
369 |
tgcactaaaaggatcctgtccataaattctaaacaatggatgacaacccccttccccatcaaagtttgggaagaatctaagtataatacagtccaacatg |
468 |
Q |
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| T |
54635632 |
tgcactaaaaggatcctgtccataaattctaaacaatggatgacaaccaccttccccatcaaagtttgggaagaatctaagtataatacagtccaacatg |
54635533 |
T |
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| Q |
469 |
agtgccccgtcga |
481 |
Q |
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| T |
54635532 |
agtgccctgtcga |
54635520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 54636082 - 54635928
Alignment:
| Q |
1 |
ccagctctattgcaggaaggtaaaataagagatttgccccccttttcatatcagaacctgtttgctacattttatgaggttccaagtcatctcaggaaca |
100 |
Q |
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| T |
54636082 |
ccagcactattgcaggaaggtaaaataagagattttccccccttttcatatcagaacctgtttgctacattttatgaggttccaagtcatctcaggaaca |
54635983 |
T |
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| Q |
101 |
tagcaactcgcagattataacaattgtttgccacagtaacacc-tagtttatttt |
154 |
Q |
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| T |
54635982 |
tagcaactcgcagattttaacaattgtttgccacagtaacaccgtagtttatttt |
54635928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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