View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18992_high_5 (Length: 450)
Name: NF18992_high_5
Description: NF18992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18992_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 9 - 435
Target Start/End: Original strand, 51405001 - 51405427
Alignment:
| Q |
9 |
gataatactccttccattccataaacaccagcgtatcgatggaacgatggagtcattaggacattcatttcatgtaatgaatgagctcgtgttgagtcat |
108 |
Q |
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| T |
51405001 |
gataatactccttccattccataaacaccagcgtatagatggaacgatggagtcattaggacattcatttcatgtaatgaatgagcttgtgttgagtcat |
51405100 |
T |
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| Q |
109 |
gcaccttgttctgttggaattttgattgatcgcggtctcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgctgtaatcttcttcg |
208 |
Q |
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| T |
51405101 |
gcaccttgttctgttggaattttgattgatcgcggtctcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgttgtaatcttcttcg |
51405200 |
T |
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| Q |
209 |
gaggacgcgacgatcatgaagcacttgcttatggtatgagaatggcagaacatccaggaattttactccatgttgttaagttcatttctccacctggaat |
308 |
Q |
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| T |
51405201 |
gaggacgcgacgatcatgaagcacttgcttatggtatgagaatggcagaacatccaggaattttactccatgttgttaagttcatttctccacctggaat |
51405300 |
T |
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| Q |
309 |
gacattgtcttttggtgctaaattggttggtgtagcacaagataagagcaaaacagttgtgattgatgatattgaaggtagccatgatggtagtaaaaat |
408 |
Q |
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| T |
51405301 |
gacattgtcttttggtgctaaattggttggtgtagcacaagataagagcaaaacagttgtgattgatgatattgaaggtagccatgatggtagtaaaaat |
51405400 |
T |
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| Q |
409 |
caagatgaacaactctggagtgaattc |
435 |
Q |
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| T |
51405401 |
caagatgaacaactctggagtgaattc |
51405427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 276
Target Start/End: Complemental strand, 29981660 - 29981430
Alignment:
| Q |
46 |
gatggaacgatggagtcattaggacattcatttcatgtaatgaatgagctcgtgttgagtcatgcaccttgttctgttggaattttgattgatcgcggtc |
145 |
Q |
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| T |
29981660 |
gatggaactatggaatcattagggcactcgtttcgcgtaatgaatggacttgtacttagccatgctccttgctcggttggaattttggttgatcgtggcc |
29981561 |
T |
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| Q |
146 |
tcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgctgtaatcttcttcggaggacgcgacgatcatgaagcacttgcttatggtat |
245 |
Q |
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| T |
29981560 |
ttggagggacaactcaagtccatgctagtgatgtttcttacaatgttgttgtagctttctttggaggatgtgatgatcgagaagcacttgcgtacggtat |
29981461 |
T |
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| Q |
246 |
gagaatggcagaacatccaggaattttactc |
276 |
Q |
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| T |
29981460 |
gagaatagcagaacatcctggaatttcactc |
29981430 |
T |
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