View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18992_high_8 (Length: 428)
Name: NF18992_high_8
Description: NF18992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18992_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 1739020 - 1738632
Alignment:
| Q |
17 |
cacagatacctttggaattaggtatctcagtgttcgaaactggtacaacaagtgtcccnnnnnnnctttttattctttgcttcgacatagcttagaacac |
116 |
Q |
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| T |
1739020 |
cacagatacctttgggattaggtatgtcggtgttcgacactggtacaacaagtgtcccaaaaaaactttttattctttgcttcgacatagcttagaacac |
1738921 |
T |
|
| Q |
117 |
tttttggacacacatcacaggaattagtaggagtatgtttccataaatttgtttagaccttctcttgatctccagcttgcatcaaaatctttagtcacat |
216 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1738920 |
tttttggacagacatcacaggaattagttggagtatgtttccataaatttgtttagaccttctcttgatctccagtttgcatcaaaatctttagtcacat |
1738821 |
T |
|
| Q |
217 |
aacgactaaatttgttgtcagtcttccatttcatgaattaatttgtcattttgtaaatttagatgaccaaattgatttagagtcacaaatttaagcacag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1738820 |
aacgactaaatttgttgtcagtcttccatttcatgaactaatttgtcattttgtaaatttagatgaccaaattgatttagagtcacaaatttaagcacag |
1738721 |
T |
|
| Q |
317 |
tagcaatgcaaatcaacagaagcatttatacactgaatcataatttctgcatatgttggggaattgatatatacatgatctaaatgtat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1738720 |
tagcaatgcaaatcaacagaagcatttatacactgaatcataatttctgcatattttggggaattgatatatacatgatctaaatgtat |
1738632 |
T |
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