View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18992_low_1 (Length: 817)
Name: NF18992_low_1
Description: NF18992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18992_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 704; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 1 - 808
Target Start/End: Original strand, 54636062 - 54636873
Alignment:
| Q |
1 |
accttcctgcaatagtgctggtttattttcagccatttcgagtacttaacgaaatatgctgcacattttctcatagtttaaacttcaaatagttcatagg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54636062 |
accttcctgcaatagtgctggtttattttcagccatttcgagtacttaatgaaatatgctgcacattttctcatagtttaaacttcaaatagttcatagg |
54636161 |
T |
|
| Q |
101 |
ccattcatttgcagctcaaacttgttttcctgcttattaagtagggccagaataactgattacattttggtagcttgcgccttggattataaatgttggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54636162 |
ccattcatttgcagctcaaacttgttttcctgcttattaagtagagccagaataactaattacattttggtagcttgtgccttggattataaatgttggg |
54636261 |
T |
|
| Q |
201 |
catatatgcatgcacctatactcatgaagagcatgtaaaaaccgaaacgtcattaagattacttagacttgatcgaagcatattaggcatcaatatacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54636262 |
catatatgcatgcacctatactcatgaagagcatgtaaaaaccgaaacgtcattaagattacttagacttgatcgaagcatattcggcatcaatatacca |
54636361 |
T |
|
| Q |
301 |
gaaatgagaaatgaaaaacagtgggaaaatacttaaatgaagaaggcaagataagttcatataatctatgttcataggcttttaatgtaatttttgtttg |
400 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54636362 |
gaaatgagaaatgaaaaagagtgggaaaatatttaaatgaagaaggcaagataagttcatataatctatgttcataggcttttaatgtaatttttgtttg |
54636461 |
T |
|
| Q |
401 |
tgctgttttgccttattggctggatttgatgtattaactttgttggctgggcgcaggccctctcctgccgtttattgca-ttgttgcttgat---nnnnn |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
54636462 |
tgctgttttgccttattggctggatttgatgtattaactttgttggctgggcgcaggccctctcctgccgtttattgcatttgttgcttgatagaaagaa |
54636561 |
T |
|
| Q |
497 |
nnnnnngcatttagcagatttgacaaacataccatatgctcgagttcaggacgattccattccagttaaaattcaataaatatcnnnnnnnacaagattt |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
54636562 |
aaaaaagcatttagcagatttgacaaacataccatatgctcgagttcaggacgagtccattccagttaaaattcaataaatatctttttttacaagattt |
54636661 |
T |
|
| Q |
597 |
taataaaaccactgtttgtcaagttacttgttcctgtgagtgagatgcatctggaactgatctgaattgtgtaattatcatggaattccttgctactgta |
696 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54636662 |
taataaaaccactgtttgtcaagttacttgttcctgtgagtgagatgcatctggaactgatctgaattgtgtaattatcatggaattccttgctactgta |
54636761 |
T |
|
| Q |
697 |
ttgcagggagagtgcgaactaattaaaattgatatcaattgccatattcaaggtgatgttgtgatcgagggtattaacttgaatgatgatatggagcatg |
796 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54636762 |
ttgcagggagagtgcgaactaattaaaattgatatcaattgccatattcaaggtgatgttgtgatcgagggtattaacttgaatgatgatatggagcatg |
54636861 |
T |
|
| Q |
797 |
aaatgatgatgt |
808 |
Q |
| |
|
|||||||||||| |
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|
| T |
54636862 |
aaatgatgatgt |
54636873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 440 - 491
Target Start/End: Original strand, 1963694 - 1963746
Alignment:
| Q |
440 |
ttgttggctgggcgcaggccctctcctgccgtttattgca-ttgttgcttgat |
491 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1963694 |
ttgttggctgggcgcaggccctctcctgccgtttattgcatttgttgcttgat |
1963746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 473
Target Start/End: Complemental strand, 25460126 - 25460093
Alignment:
| Q |
440 |
ttgttggctgggcgcaggccctctcctgccgttt |
473 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
25460126 |
ttgttggctgggcgcaggccctctcctgccgttt |
25460093 |
T |
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