View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18992_low_10 (Length: 385)
Name: NF18992_low_10
Description: NF18992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18992_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 31603649 - 31603961
Alignment:
| Q |
6 |
agtgagaagaaaataaagaaatgcgaataaagaacaaatgcttaagaataatgcatggatttgatttcaactt----gtaaatttacaagtataagctca |
101 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
31603649 |
agtgacaagaaaataaagaaatgcgaatgaagaacaaatgcttaagaataatgcatggatttgatttcaacttaagagtaaatttacaagtataatctca |
31603748 |
T |
|
| Q |
102 |
tgtcttttgcctcataaacgaggtttatttatagcctaacatcatagacaagacatttcgagttacaagctataaaccatagaattctaaaggtttgtaa |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31603749 |
tgtcttttgcctcataaatgaggtttatttatagcctaacatcatacacaagacatttcgagttacaagctataaaccatagaattctaaaggtttgtaa |
31603848 |
T |
|
| Q |
202 |
caaccgtttttgttctgcattgggtgcatgattgtgcttcacccatgcataggtcatgcttaagtttctggttatgcttggaaaaatctggcacagagta |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31603849 |
caaccgtttttgttctgcattgggtgcatgattgtgcttcatccatgcacgggtcatgcttaagtttctggttatgcttggaaaaatctggcacagagta |
31603948 |
T |
|
| Q |
302 |
catagtcgtgctt |
314 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31603949 |
catagtcgtgctt |
31603961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 53000674 - 53000735
Alignment:
| Q |
156 |
atttcgagttacaagctataaaccatagaattctaaaggtttgtaacaaccgtttttgttct |
217 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
53000674 |
atttcgagttacaagccataaactatagaattccaaaggtttgtaacaaccatttttgttct |
53000735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 53000523 - 53000589
Alignment:
| Q |
12 |
aagaaaataaagaaatgcgaataaagaacaaatgcttaagaataatgcatggatttgatttcaactt |
78 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||||||||||||| | | ||||||||| ||||| |
|
|
| T |
53000523 |
aagaaaataaataaatgcaaataaagaacaaaaacttaagaataatgtaggaatttgattttaactt |
53000589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 12521144 - 12521005
Alignment:
| Q |
85 |
ttacaagtataagctcatgtcttttgcctcataaacgaggtttatttatagcctaacatcatagacaagac----atttcgagttacaagctataaacca |
180 |
Q |
| |
|
|||||||||| | |||||||||||||| |||||| ||| ||||| ||||||| ||||||||||| | ||||||||||||||| ||||| | |
|
|
| T |
12521144 |
ttacaagtatgaagtcatgtcttttgccacataaattgggtatatttgtagcctagaatcatagacaatgcattaatttcgagttacaagtcataaatga |
12521045 |
T |
|
| Q |
181 |
tagaattctaaaggtttgtaacaaccgtttttgttctgca |
220 |
Q |
| |
|
|||||| ||| ||||||||||||| |||| |||||||| |
|
|
| T |
12521044 |
gagaatttcaaaagtttgtaacaaccattttggttctgca |
12521005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 29968499 - 29968573
Alignment:
| Q |
104 |
tcttttgcctcataaacgaggtttatttatagcctaacatcatagacaagacat----ttcgagttacaagctat |
174 |
Q |
| |
|
|||||||||||||||| || || |||||||| |||| |||||| ||||||||| ||||||||||||||||| |
|
|
| T |
29968499 |
tcttttgcctcataaatgatgtctatttataacctagaatcataaacaagacattaaattcgagttacaagctat |
29968573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University